Gene detail

Detailed information of BRAKERYMEP00000025148.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015756495.1, PREDICTED: Bardet-Biedl syndrome 12 protein homolog [Acropora digitifera]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000025148

atggcggacggaGGAACCTTCCTTCAAAAGACGAAAAATAGCAACAGTCTTTTAGTGGCAAGAGCTGTTGCTTCATCTGTGAAAAGCCTGTTAGGTCCGCAACACAGTTTAAAGTGCTGTTCATCTGAAGGGGATGCCGTCATATGTAGTAGTGCTTCCAGACTGTTGCAATTTATTGATATCCAGCATCCTACAGGTTTTATTATCAATGATGCCTGTCAAGGCCAATACAAGAAATACCGAACAAACTGCAAAACACTGGTCTGTATGGCTGGTTTCTGGAGCAAAGGAGTACAAGACTTGCATGATCAGGGTCTCCCTGTGCCAGTTATTGTGCGACTTTTTGATGATGCCCTGGAAGTGTGTGAAGATGTATTGCAAGAACTGTCACTTCCAGTAATTGAAGCCTTGCAAAATCACTTACCTGCAGAAAATTATGATGCTATAATTTCTGACAAGGACATGACCTCTTTATTTGAATCCGGAGACAATGATGACTTTGATGAAGattatgatggtgatgataacAGTAATGATGCAAATGACAGCAAGAATGATGCCACtactgctgctgatgatgacgATATATCATGGTACTTTGATGGTCATATCCCAGGGAGTAGTAATCATACCCCAGGGGTTTATGGTCACATCACAAGGGACAATGCTCATTCCCCTGAGTATCATGAAGGTATTTCACAGATCGCTAACTTGGAGACAATCAATGAATCGGTCTATTCCATGGCTCTATTCGAGGACTTTATACCAGAAACGAAAACTTGCAAAATTGATGATCTTTCTTCTGGCGTTTGCGGAAATGGACTTGTAACTAGCAACAAAGAGGAACATGAGAGAGAGAGCAATGGCGATGTCAGAGAATGTGTTAAGCAATCAACATCTCCATCAACTGAGTCGATGGAATTGCAGAGTCATTCTTCATTGGAAGAAGAAATGGTAaatgaagaagaagacgaaTTTGAAGCTTCCTTTGTAGATGCCTTTGGTGGTTGCACCCAAGACGAACTTCAGTCTTCTCAGTGGGGATTTCTACACAAAAAAGCTTCAAGGATGAAGATAGCAACTCTTGACTATACAATTACGAAAGTGTCGGAAACACAGGAATACAAAGATAAACTGTCCTCTGCGTTTATGCAGGAACTGAGAGATACTGAcacaaagaatgtaaaaaatGTGACTGGAGCTCCTTTCGAGGCAGAATCTTCTAAGACCGAACACAGTAATACTATGAATTCCAGAAGTGTAATTTGCTCTCGCaacaatgaaaaagaagaaactgaCAAACTGTTGTCTCTTCTTTTGGCTAAACTGAAGGGTAAGAACTTGGAAGGTCATAAACGAATCAGGCTCTCTGAAATATACAACGGAAGCAGACACTTTGTGAAAACTCCAGTGAAAACAACGATGCCAATCAGAACGCTTTCATCACAAGCTCTGTTTTCAATGCATAACCACTGTGCAGATATTTTAACCAGCAAAAGAACAGGAGTTAGAAAACTTGATCTTTTAGATTCGTCACTTGCAGGAACTTTGTCAAAGGGAAAATCTAAAACCTGTCATGCCAGTAAAACCAGTTTTCTGGCCAGGGCAAAAACTGGTCAAACTGGAAATCCCAATGTGGGAAAAACTTTTTCACATATGGAATGTGATACCCATTCATTAAGAAAAAACAGTTTACAGTCCGTTTCCAAGAGAAAGCAGGCAAAAGTATCAGATTTGACAAGTGTAATTCCACTTAAAGAAACAGAGCCAAATGAAATCATGGGTAGTTCCTTGACTGTTTTGCCAACCAAAGATCAAACGAAATTAATGGACAGAAATATGCAGATGCTGTCAATTTTAGGAGAGCTTTTATCCCATGGGAAGGAACAAGAAATGAAACTTGCTATTGAAGTCGTAAAATCTTTATTTCGCTGTTCTGGAGAAGTTTTTCTTGAAGAATTTGACATTCATTTGAATCTTATTCACGCAGAGCTGATTCTTGGTCCGCCAAGTTCCTTCTCCCAAGTCATCAATGGTTTGTTGTTGGAAAATGCGGCTGATTATCAAACTGCAGCTACAAGTGGCAGTGCAAGTCATAGTGAAAGTCGGCGTTTTATTGCTATAGTTAATGGTGACATAACTGAATCATTTCGCCACCCAGGCCTCAACAAAGAACTACACAGTCACAAAATTGTTCGAAGCAAAAATGATTTCACAGAGTCAGTTTACAATCAAGGAAAAGATTGGTCCCATCATGTTATGGAAACTCTCACTTCCCTGAACATCGGGATTCTTGTCGCCAAGGGGACTGTTGATGTGTTAATTTTAGACTATTGCTTATCTCACAATATTGTCGTACTCCAGAACATTGTATACCCAAAACTTCAGCTTCTATCTTTTGTTACCGGGGCCACCCTGGTGATATATCTTACTGATTTGAGGGAGCAGGATATCGGAGGACCTGTTAGCATAGAAACATGGGAACTTGGCTGGGCACCTTCAGCAGTGCGGCGGAGAAAGGACAGCATTGGTGGTGATGATGTTGTGCAGACATGTCGATATGTACTTGTCAGAGAtgccaaaagaagaaaaactgaacatGAAGACTTTGTCAGCCAACTACAAACTGTGCTTCTGTGTGGTCCAAGTAAGGATCTTCTTTGTGACACGGAAGAGCGTTTCTGGAATTCGGTTCATCGCATGAAGAACTGCCTCTCTTGTGGCCATGTGGTGCCTGGGGCAGGAGCTCCTGAAATAGCTTGCATTCAGCGACTGAGCGAACAACATGAGTCCAAGAAGACGCTTCACCCTCTTCCTGGATGGCTAGAAGAAAGTGTGGAGCTCTTCAGGCCTGTAGTCTACAGTGTGTTTGCCGAAGGATTCAAAGATTTTCTCGCTAGCGTTCTTTTGAACTCAGGAAAATTCACCAGCCCTCTTGGAGTTTCCACCTATGTTGAAAATTTTGTCAACAAAGGAGTTCCCTTGAATTTTCATGGAACTTTCTGTGAAGAGACATCCGAGAACAATCATAATGTACTCAACATCGGATTTGGAGAAGTCTCGCGCGACGACGCGAAACCACATTATCCAGACCCCCATACTCAGGAACGTCGTTCCCAGGGCGTTTCTCCGAATCCCAAAGAACTCGCGCAAAACGTGCTTTTCAATTTGGACGATTTCACGGCGTGTGGGAGCTTGTCACGTGAAATGGGAAATCTTGTATGGGATAATTACACAGCTAAGAAAGAGGCATGGAAAAGGGCTGTTGGGATTGTAAGAATTTTGCTTCAATCGGATATGTTTGTGGAAACTGGATTACACCATGCGGTAAATGAACCGGATTTCTTGTGA

Transcript

BRAKERYMET00000025148

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SUD9	Chaperonin-containing T-complex member BBS12 OS=Mus musculus OX=10090 GN=Bbs12 PE=3 SV=2
Q6ZW61	Chaperonin-containing T-complex member BBS12 OS=Homo sapiens OX=9606 GN=BBS12 PE=1 SV=2
Q5RC62	Chaperonin-containing T-complex member BBS12 OS=Pongo abelii OX=9601 GN=BBS12 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007301 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00118 all species →	Cpn60_TCP1	TCP-1/cpn60 chaperonin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002423 all species →	Family	Chaperonin Cpn60/GroEL/TCP-1 family	Interproscan
IPR027413 all species →	Homologous_superfamily	GroEL-like equatorial domain superfamily	Interproscan
IPR042984 all species →	Family	Bardet-Biedl syndrome 12 protein	Interproscan
IPR027410 all species →	Homologous_superfamily	TCP-1-like chaperonin intermediate domain superfamily	Interproscan
IPR027409 all species →	Homologous_superfamily	GroEL-like apical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46883 all species →	BARDET-BIEDL SYNDROME 12 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0045494 all species →	Biological Process	photoreceptor cell maintenance	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000025148.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.