Gene detail

Detailed information of BRAKERYMEP00000025634.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3153762.1, unnamed protein product [Porites evermanni]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000025634

ATGTATTCATCTCGTGTGGCCGATAAACTAGGCCCCAACATTTATGAAGAGCGTGCAGGCGGTATATTCACTCCAAGCTGCCATCGTTATAACAATGACTCGGTGACAAATACAACAAGCGTCAAATCCGGAAAATGTAATGTGACGACCACATCACCCGGGTTGCTCGCGTGCAAAAAGGTATTATTCAAGGCTCCTTTCATTAGCGGCCAAGAAATCAAGGTTCTGGCTTCAAAGAGCCATTCTGTGAAAGGCGCAACTCGCGGCAACGGCGCTGCTGTCTGGATTGAGTCAGCCAATAATAAGGGATTTATAGCTTGTGTTCTGGAGTATGGAGATGGTTCCAATGGCACCACAGAAGTAAACTGGATCGCTTTGCAAACACCACCTGCCGGTTCTCAAATAGGGACCACTTCCTTAAGCCCATGGACTACAGGGACGCAGTGTAAAAGAATAGCTTTCCATAAGCCTTTCTCAGCTCCTCCAAAGATATTTGTGACCGCCAGTCATCAGAGACCTCAAGATGCCTCAGCTGTGTGGGTGAAGAACTTACGAATGGGTGGTTTTCAGATTTGTGTCAGAGAAATTAAGATTTTTGGTGGTCTTCACAAAAACGTCGAAGTGGACTGGCTTGCATTGACCGATCTGAGGATTGATAACTTTACCATGACAGACAGTCTTCTGTTTATGAAGAGCAACTGGTCATCTCAGCAAGATAACGACACTCTCTGTCGAaaaatcaaattcaaagatCCATTTTTCGCTCCTCCTGTGGTCATAGTGTCACCAACTAATGGCTATGACTATAATAAGTCTATAACCGGATGCAATGCATTCACAGCGTGGGTGGAGtaTACATCCATAAGCGATACTGAAGTGTGTGTAACAAGTCTCAGCAGAACTGCTATCAGTGGGGGGACACAGAGAATGGATTACTTGGTGATTGGAGGTGGGTACAAATCTAATCACAAGGATCCTATATATGATGGTCACCACAGTTATAGACCTTATGACGAACCTTTTATCCTGGATTTGCATCCATGCCTTGTGGTGACATGTCATTATCATGGTCTATGTAAGGCTTTTGGACCTTACGATGCACGCTGTGTGTGTAGGGAAGACTGTCCGTCCTACCAGGAGCCCGTATGTTCGTCCAACGGTACAACATACGACAACAAATGTTTTTTCAAGAAGGAAATGTGTCTGCTACAACTCAACTTTACTGTGCAACATCCTGGAAGCTGTGAAGGGTTTCCTTTTCAACATGGCCGCGTTCACATGCCCTACATTCCTACCCTTGGATATTATCATTGCGAGAGAGTTCATTTCCGGCCTTTTGTATTTTATCCTGACAAAGCCATTGAAGTGCAAATCACCGTCAATCATGTGGATACCAATGACAAGTCTTATGTCCATGATGCAGCTGTGTCGTGGGCTGAGAAAATGGATTCTGATGGGTTCACTGCGTGCGTTATGGCTGCGGGATTTGGTGAACGAAAGTCAAATGCCAATGTGACGGTTGATTGGATGGCGTACCAAGGAGCGCCGATGGGTGGTGTTACTGGGGAGGTGCGCTTGTCACAATGGTGGACCGGTACGACGTGTGAGACAGTGAAATTCCCGGCAGGGAAATTGACCGGCAAGCCTTCAGTGTTTGTCACCGCCAAGCATCACAATCCAGGACTGAAGCGTGATGCGGCCAGTGTCTGGATTGAAGATGTCACGCCATCAACCTGTCAAATTTGCTTGATGGAATTGCAAAATTATGCAGGATCACACAAAGATATCCATGTTAATTGGTTGGCGTTTTCGTATCTTGACAAGCCTCCTTTTTCAGAACACAACTCGATCCACTTTCTGAACGATCAGCCTCCTTTGGCAGGCCACAACAATGCGTTTTGCAAGGATGCTAGTTTCGTAAAGACTTACAAGACAACTCCACTCGTATTTGTTGCCGCTAATCATTCATCGAAAAAGGGGAACCAAAGTCCGATTCACAACAGTGTGTCTGCTTGGGTAGAGTACATCAATACAACTGGCTTCCGTGTATGTAGCAAAGAATTGTATGAAGTAAAATATGATCCACTGTCCATATCGTTTATGGTTTTGTCAGATATCTGTAGGCCTGGATGGGCCTTTTTCGATGGATTTTGCTACTTTACAAGTTCTGAATGTGCGCCGTGGTTAACAGCTGTGTCGAACTGTTCGGCGATTGGTTCTCATCTGGTGACAGTTCATAACCAGGAAGAAAATGTCTACATACAACATCGCCATAGCGGGGAGACTTCATGGATTGGATTGAATGATCGGAGTGTAGAAGGATCTTTTGTTTGGGCAAGCAAAGAAATAAGCAAGTTTAAATCCTGGGCTCCGCAGCAaccaaacaactggaaaaacgAGGATTGTGTGCACACTCTTGGAGCTAACAATGGATACAGATGGAACGATGTATCTTGCGATGAGTGCCACAACTTTACTTGTATGAAAGACGTTGACGAGTGCACCACTAATTACCACAGATGTGATGTAAATGCTGTTTGTGCTAATACTGTGGGATCATACATTTGCAAGTGCAAAGCTGGATACTCTGGAGATGGAAAGAATTGTACCGGTAAGTGA

Transcript

BRAKERYMET00000025634

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q61361	Brevican core protein OS=Mus musculus OX=10090 GN=Bcan PE=1 SV=2
P55068	Brevican core protein OS=Rattus norvegicus OX=10116 GN=Bcan PE=1 SV=2
Q96GW7	Brevican core protein OS=Homo sapiens OX=9606 GN=BCAN PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051004 all species →	Family	Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22802 all species →	C-TYPE LECTIN SUPERFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0044419 all species →	Biological Process	biological process involved in interspecies interaction between organisms	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000025634.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.