Gene detail

Detailed information of BRAKERYMEP00000025754.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029192377.2, E3 ubiquitin-protein ligase ubr3-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000025754

atggcAGAGGGTAGTATCTCAGTGAGAGCGAAGCAAAGTACGGCCGCCAATTTGAAGGCTCACTGTCATACGGAGAAGGGAAAGCAAGAGATCAGGGGATTTTTAGATGGTGTGCTTAGTCTTCAACGCTCTTTCGATGCCGAAAGACAAGAATGGTGCTTGTGGTTAATTGCCGGAGGAAGACCTCCAGAGGAATTTAGAAATGTACTGCGCTCCTACGACACCCCAACAATATGTGGTCTGGTTTGGAACAAGAACTTTGTGGCGTATCGATGTAGAGACTGCGGAATCTCTCCTTGTATGTCGTTGTGTGCGGATTGTTTTCACGCCGGAAATCACGAAGGACACGACTTTAACATGTTTAAAAGTCAAGCCGGAGGTGCTTGCGACTGTGGGGACGAAGATGTAATGAAGAGAGAAGGGTTTTGTGATCGTCATGGAGCAAAAGAATCAGCAATTTCCAGGACTCCACCAGCTGAACTTTTGGCCATGGCTCATATTATTGTTCCTAGACTGTGTTTGAGACTGCAAAAGCAATTAAAAGAAATGGACCCATCTATAATTGatCCTGTATCTGATGTCATGAGTGATGCAGAAGTTCTTGTGAATTTTCTGGTCCAGTTATGTGATACCAGCACCATGAAAACTATAGTTGCTAAGTCACTGATGAAGAGAATCATAGATGTAGAAACAACTTTCACAGAAAAGAAACAATCCTCTATTGCATATCCATCATCTCATAATTCAACGCATACCTGTGACAGAATGGACAGTGCAAGTTCTTTCTCGAGTGTTTGGTCTTCAGATAGTATGGATGACATTGTTAACAGGACTTTCTTGGACTTTTTGATGGATTTTGTGGCACAGTTTGAGTTTCCACAAAAAATAGTGACATTTCTGCTACATCTTCTCCCAAATGCGGAGTACAAGGAGGCATTTACCAGAGTATTCTGCCAAAATTATCAGAAGATAGGCAAAGCACTCGTACTACATAGCGAATCCCAAAGTGTGGAACAGTTGTCAAACCGTGTGGTCCATGTCAGTGTGCAGTTATTTAGCAACAAGATTCTCGCAGAGAAAGTTGTCTGTGAGCAGAATCTTCTTCACATATTGGTTAAGGTCTTACATGACATGACAAGACCGTCACTCATGAATTTCAGAAGAGGAGACGTCGACTCAAAACATAATGTGGTGAACTGCCAGGACCGCGCCCTTAACAATCACTGTTACTGGCCAATCGTGAGTGACTTCATCAATGTCCTGTCACACAAGACTATTGCCGAGATGTTTATGCAGAATACTGACCTCATTAAATCGTGGATGAAATTCATTGGCCAGTTGACTGGGATGAATTTAAATCTGCGCAAACTGTTGAGGCACGTTGAGTTTGAGCCCAATACATACTACACAGCTTTCTCTGTGGAGCTTGAGGCAGCGTCATCTCCTCTGTGGAGCTTCATTAATGCCTGTACAGCACTGAAAAATGTGCAGTGTGTCCAAAACATGATCAGTGGAAGTGTAGAAGCTCTAGAAAGGTGGTACGCCAAAGTTAATAATAAGcctCAGCGAGGGGAAGTCACATTTCATCTTCCTTTGCATCGTCACCTCGCGGCTTTCATAAGTCTGGCCGTCTCTCACTTCGAGATTCCTCTTGAAGAAGTGATTCCTTCACAGCAACTTCTCAGAAACGTTTGTGAAGACCTCATTCATATTCAGGCCGCCATTTGTGAAATCCGTGCAGGAAGGTGGGTGCGCAATGGATCTCAGATGAGAAGTCAAGTTCGGTTGTATGCCGAATGTCATTTCTGTAACTCAATGCAGGACTTGGACATTTTCCTATTACAGGTGTGTGCTATGTTTTTGGACCCAGATGTCTTTATAGACACAATGATTGAGAgTTTCAGTCTGAGACACTGGTTTAAGTTTGGTGTGCCTGTGGTGTCTAGTCCTCCCAGTTTTGATGCTGATACAGAAGTTTCTATGGTGGAAGGAATGCTTACGCTACTAGTTACAATCTTGAGCAATCGACTGCATCTAGGACTTACTGAACAAGAAATTTTACGACAGGAGATGGTGGCTCAGCTGTTCCACATTCCAGATAAACCGGGGCAGTCTCGGAACACACAGGACTTTGAGAAGACACTCAATGAGCTGGCAGATTACAAAGGCCCCGGATTCGAGAGTGGATTGATGCAGCAAGGCACATACGTTCCCAAAGATTTTGTTTGGAGGAATGATTTCGATTACGTCCATGTGCTGCTAAGAGCTGTCCAGCGCCAAGATGTACAAACATCAATGCAACGCTACAAAGCATGTGTGTGTAAGAATGGCTCAGCGCTGAGCGGAGCACTGTGTCCTCCGTTTCTGCCACTAAAACCACTCAAGGAAAAATTCAATGGCTTGCTACAGGTTCTGCACTCGAAGAAGCTTCACGGAgtcttatttttcatatttcacaagGCAGTGGAGGATAGTAATTCCCTTCCTGATGCAGTTCTGCATCTAGCAGCTTATCTGACAAAGCTGTCTTTACTGGAAAAACCAAGAATTTCACATGTTGGGTCCCATGCAACCGGGGATCGACAGTCAAACGACATGGGCTGTGTAATAGTCGACCGCTGCATTGACTTCCTCGATGCCTACGGTAAAGACGTTCACGACCTTCATCAAACAGGAACTCAGTTTTTGAACAGAGAGCTAACATACATGTTGGAGATGGATCCGTATGCTCCGCTTCATCCTGAGAAGGTCTCCCCCCACGAAGTATCTGCTGTCATGGCGGATGTGCTGCACAATCACCGCCTCATGAAGCCTCCGCTATTTGAGCCGTTTTTGCCCTTTATGAATGGAGTACTTAACAGTGTCCTTCAGAACCAAAGCAGCTGTCAGGAGAAAATAGCGCAACTGCAACACATTCAGTTCCTGATCGAGCAGCAGCCACCTCACAGGCGACAACTGATCTTAAAGCTCACCCGACATCTCATCAGTGTCTCCGAACGACTTAAAACACCATCGAGAAACTTGGCCCTCGCTTGCGATGAAAGCCAGCCTCATGCTGTGGAACTCTCCATGTTACTCATGTATCTAAACAGATACCATGAGTGGCTTTTTAGGATCTACAAAGTACCTGTTGGTTGGCCAAAAACTATTGATGATTTAGGTTTTTGTTCGGCAAATATGGTTGACAATATCAGTCACATAGTGCAGGCAGTAGATTATCCAATGGATACCAGCGATGATAATGAAGCACCAGAATTATCCACTCGTGGCGGTCAGAATTTGTCAGCGGATAAGCCATCCTTGGATTCACGTGGAGGCGAGGGCTTGACTATTACGGATGCCCCGTCATTTCAGGGTATCGTACAACAATTCAAGAGTGTAACAAAAGCTTCTCAAGGTCAGTTGTTTCATCCTTGGAGAAGAAGTGTTAGTTAG

Transcript

BRAKERYMET00000025754

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZT12	E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens OX=9606 GN=UBR3 PE=1 SV=2
Q5U430	E3 ubiquitin-protein ligase UBR3 OS=Mus musculus OX=10090 GN=Ubr3 PE=1 SV=3
F1QJX5	E3 ubiquitin-protein ligase ubr3 OS=Danio rerio OX=7955 GN=ubr3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002540 (this species only)
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02207 all species →	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan
IPR039164 all species →	Family	E3 ubiquitin-protein ligase UBR1-like	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21497 all species →	UBIQUITIN LIGASE E3 ALPHA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071596 all species →	Biological Process	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000025754.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.