Gene detail

Detailed information of BRAKERYMEP00000025794.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044178800.1, collagen alpha-1(XI) chain-like isoform X2 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000025794

ATGCGCGGCCCAAGACCCCCATTCAGACATCATGGACCACATCCGTTTCCCCCTTTTGGTCCAGGAGGACCACATGGACCTCGCATGCCCCCTGGGGGACCCATGCCTAGACCTCCAGGGCCTATGATGATGGGTCCACCAGGACCTCATCCACGTGGACCACCGGGGCCCATGATGCGTGGTCACATGCCTGGCCCTCATGGTCCACCAGGCCCCATGGGAATGCCACCAGGACATATGCGACCCAGGATGCCTATGGGTGAACCAGATGGCCCTCACATGTGGGGTGACAGAGGCAGGGGAAGAAGACCTGGAAAACAGCCTCCTCAGCGGCAACAGAGCCAGGAAGGCAAAAGTTCAGTGGGGGATAACAAGAAACAAGAGAACTCTAAGAAGTCTGAGGGAGAAACACCAGGCCCTGCTGCcaaaaagCCAAGAAAATCAGAAGATGAGATGGAAGATGTTGATGAAGAACGGTTGTTGAAGAGTGACGACGAAGGGGAAGGGGCAAACAATGTAGATTTGGATGCGGTTAGTATACATGGAGATGATGAACTTGACGATATTGACAAGGAGATCAAAAGCCTATCCGAAGGAGCAGCTGACAGCAGCAAGAAAACACCTCAAAAAGCTGACGTGAAAAAGGAGCCATTGCCAGTTTCTGCcagtaaagaaaaaatgaagaatgacagtgacagtgaggATGAAGAGAAGAAGAACAGACAGCGTTTTAAGTCTGAACGACCCAAAGAGCAACAGCACAAGATTGAGAAATATGAACCTAGGAGAGACTTCAGAAGGCAAGATGATAGAAATTGGAACAAAAGAGACCAAGGAAGAGGGCGCGGGAGAGGTGGCCCGATGATGGGGCCACCTCCACCGGATATGATTCGTCCAGGGATGCACGGTCCTTTTCCCCCAAGGGGACCTGATCCATTCATGCATGGCCCCAGACCAGGAATGGGCCTCGGACCAGATCACGGGCCTGGCTTTGGTCCCAGACCTCGATTTCCAATGGGTCCAAATGGACCACATCCTGGCCATATGCCTGGGCCCCCTGATGGGCATATGCCTGGGCCACCAAGGCCACCACAAGGCAAGAATATACACATCAACCCACATTTCAGACCCCCTCCGGGTGGTAGGGGAATGCCAGACGGTCCACCTCCCATGAGAGGTCCACATCCAGGCCCTCCAAGACCAGAGATGCCAGGGCCCCGTATGCCTGTTCCCCAGCCGGGCCCATCGAGGCCAGAAGGTGCCTTTCCACCGGGCCCCGGAGACTTTGGCCCCAGAGGCCCACCCCCAGGAAGAGGGCCGCCATCAGAGCAGGGTCCCAGGTCTGGAATGGGCCCCGAACATGGTCCACGGCCTATGGGCCCAGGAGGTGCTGGCCCAATGTCAGGTCCCGGACAAGCACCAGGTCCTAGACCGGGGCCAGGTCATTTTCCGGATAACGACATGAGACAACCCCCTGGAATGGGCCCTGGGCCACATTCACAGCCTAGGGGAGCTCCACCTGGGACAGCAAACATGATGCCACCACATGGCCCCATGCGTGGTCCTTCACCAGGTGGCCCCGGTGGGGGACCTCATGGCAGTGCACCAGGAGGCCCCAGTCCCTTGCCAGGTCAGCAGCACCCAAGTATGCCACAGAGGAGTGCCACACAAGGAATGCCCTCCCCAGCAGTACCCACTGGAGGGCACATGCACCCAGGATCCATGCAAGCAGGGATGCGACCGCCTGGATTGCACCCGAATGCTGACGTGTCGATGTCCGAGCCGGAAAGGATCGTCATAGGCCATCGCGTGACAGTGCCCAACATGGAAGCGGCCAACGCCGCGATGAGAGCGGGTGGTCCGCCTCCCGGATACAGTGCCGTCGGAGCTGTGGCTGCCGCTGCCGCTGCAGCACAAGGTGTTAACTTAGCTGCTGCAGCTGCGGCCGCCAGGCAACAGTTTCCGTATGGTGCGCAGTTTCCCTACGATTACGCTGCTATGTACGGTGCCGAATGGCAACAACTtatgcagcagcagcagcagcgcgCTCCGGGCTATGCGGCTGCGTTTGGTTTGGATAAACACGCAAAGAGccacaaatcaaagaagcatcGCCGGCGTTACAGTGCAGACAGCGCAgagagtgacttcagcagtgcGTCAAGATCACCGTCCAGATCAGCTTCGCGGTCGTACTCGAGATCGCCGGCGAGATCATGGACTCGTTCACGGTCACTTTCGTTGTCTCGCTCACGGTCAAGGTCGTCGTCCCGATCAAGGTCATTTTCCAGGTCCGTCTCACCGCGAACACCGCAACCAAGATCCCCTGTTCGAGCGGCTAAACCAGCTTCGCATCCCAGGCGAAACGTAGAGAGCCGCAGGGAAAGAGAGAGACCAGAAAGAAATCGGGAAAGAGAACGGGATAGGCCAAGTAGAGAAAGGCCGGAAAGGACTAGAGAAGCTTACAGAAACCGTGAAAGAAACGACCGGGAGAAACCTCGCGAAAGAGAACGGGAACCGCGGGAAACTCGAGAGACGCGGGAAACACGCCACGAGAGACCACGAGAGAGAGAACGCGAGAGGGAAAGATCGGATCGCGAGAAAACCAAGGAAAGAGAAAGGGAAAGGaccagggaaaaagaaaaacccaaaGAAAGCCACCGAAGGAGTCGAAGTAGAGATCGAGCATCGCATCGTCGCGAGGGAAGAGAATCGAGACATTCGGAAAATAATTCGTCAAAGCGAATCGTTGTTGGCCCTTCCGACAGCAAGACTAAGGCGTCGGGGTCGACACCCGACTCCAAGGCCACCCGCGTGGTTGTGACCAAGGCATCGAGCAGCGGCAAACCGTCAAAccgtgttgtgattggttcattgcccGAGGCGATAACCCCAAGTCGACTGAAGGAGCTCCTGCAGGGGATTGGGCCAATTCAGCAACTGAAAATGTCCACAACTAAACACAAGGCTTTAGTGACATTTGAAAAGAATGATCATGCATTGGCTTGTCGTCGTAAATTTCACAGGACCGTTGTCGACGACAGCCAAGTGACAGTTGACTTTCtgtga

Transcript

BRAKERYMET00000025794

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005437 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23172 all species →	AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0072318 all species →	Biological Process	clathrin coat disassembly	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000025794.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.