Gene detail

Detailed information of BRAKERYMEP00000026053.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_020621799.1, LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A-like [Orbicella faveolata]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000026053

ATGGTATTGGTTGCGGATCTTCGCCCAGATGAGCTTGTTTCAGGAACCATTGTATCAATAGTTGTTCAAATTGAGGGTGGAGAAGGCCAAAGAACAGTAACAATCCGATCGCCTTTGCAGATTAACAACCACTTCCCAATCCCAATGGATTTGATGTGCAAGAAGGAAGAACAGTTTTCTAAGGTCACCACAGTGCAACCTGACAGTGTTTACAGTGTTCCTACGATGCTGGCCCACAAAGCCGCACTCCATCTCAGGCCCGGAGGATTTGGGTATGTTGAGAGTTCTCCTCTGTTGTGGAACAAGCTGGCATATGAGGGCCATACTTCAGTCAAGTGTTCTTCCCCTGATGGGGATGGGCCACCTTTCCATATTGAGGTTGACTGTGAACAAGTCTCTTATGCTAAAGTTCATGGCTCCACGGAGCATGCACCAAATTACATCCTCCATATCTACCCACCAGCCattctgcataattatttgCCATACAACGCTCGCTTTGCATTGCAGGGCTTGCCTCTTGATCTCAAGGGTGGTGACAAATGGCCCCTGTTTTCTGTCAATATTGACAGAAAAGTCACTCTTCGTGTCCAGATTGACAATTACCAGCGAAGCTCATGGGAAGGAGTAATTGAATTGTGGAAAGGAATGGACGAACTCACAACATTTACGCTTCGGTCCACTCATGTGGCAGCGTATGGCAATTACCTGGAGCTGGGTGTTCTTGCCACGTTTGAAGGCACTTTAAACGTTACTTTGTACAGCCCCTACTGGATGGTGAACAAGACTGACCTGTATCTGGAATACATGGCCTCAGATGATGAAACTGTCATCCCTCATCCGGCTTCCCTGACAGAGCCTGTGATGTTTTCGTACCGTGGGAAAGGAAAGCTCTTTGCAAAAAAGACGGCCCGTGTTCGTTTGGCGGCTGGTGAATGGTCCAACAAGTTTTCTTTGGATGCAGCAGGCAGCGGAGGATTAATCAAGGTCGTGAAAGACGGCAAATTGCATGAGGTTGGTATGCAGACTACTCTGTCCTACTTTAGCTTGACAAAGATCGTGGAGTTCACGCCATTTCACCTCATCAACAATGCGACAGAGTATCCAGTGTTGCTGACAGACTCACCAAACCAGACAGCAGCATCCTGGGTGACAGTGCAGCCTGGGAAGTGTGTGCCGTTTTGGCCGATGTCATGTCCATCCAAGAATCTTGCCCTTAGAGCTGGTGACAGCAGCGAATTTTCCCCGCGCTTTAACTTTGAACCTGGCGTGACAGTGGTGCTGAAAATGAAGAGCAAGGTTGATGGAGTAGGTTTAAGAGGCCGTGTTCTGTCATTTGACAGTGAAAATTTGGGTTGCGAAAACCACTGTCTGGGTCCAAACCAGTGTGTGTTGTTCACGTGGGATGAGCCCTCCGCCAGTAAAGAGTTCGTTTGGTTTGTGAAAGGTTCTCAAGAGATAATTAAAACTGACTTGTCACAGACAGGCTGTGCTGACTTTGAGCATAAAGGCAAGAAGTTTTATTGGGCTGCATTTCTCGAAGGGCTGCAGAGAGTGTTGTTGATTATTGATGACTTCACACTGGCTTTCAGAGCTCAAGTGGAACAAACAGAAGAAACTTCCCAGCGTATCAGCTTAGTACTGCAAGGTGTTGGTCTTTCACTTGTGAACGACGAGAAAAGCATCGAAGTCGCCTACCTTGGAATCAGACCGAGCGATGTTGTCTGGGAGGAGcggaaaaagaaaggaagatggAAGGCAATGAAAGTGCGACTGTGTGATGAGCTGGAAGACGCTTGGCAAAGAATACAGCAGGAGCTGTCTTTGCCTGGAGCGAAGCCTAATTACATCTACAAGACTGCCGACATAGAGGTTGATTTTCAAGCGATGGAAATTGTACGGCCTACAACACGTCAGCCAATTAGGAGATCCTTTTTACCAGGAATTTCTCTTGAGTACATGGCGTCACCAAACAAACTTGATGTTTACGCCAAGATTAACTCTGTCCAGATCGATAGCCAGGTGCCAGGCTGCACCTTCCAAACAGTTCTGTTCCCAGTACCTCCCCCTAAGTCACTTGCTGCTGAAAAGGCACCCAAGCCGTTCATTGAATTAAGCCTGGTCACTAAGCAGAGAGAGCATTCTCATGTACAGGAAATCAAGTATTTTAAGGTTCTAATTCAGGAGATGGATGCTAAAGTTGATATGAGTTTCCTCATGGCGCTCATGGGACTGCTTTCTTCAGACGACATTGATAGAAGCCAAGAGGCTCTCCAGTATTCGCTAGACAAGAAACGAGTCCATGACAGCCTTGGAGATACATTTGCCGTACAGGCTGCGTTGAGCATTGGAAGAAACTTTTTCAAGTATTTCCATTTGTCACCACTGAAGGTTCATTTGAGCTTCTCTCAGCTGGGCGGTGGAGCGGATGGTGATAAAACCAAGACCCGTATCGGAGGCAGTTTTCTGAGCCTGTTGTTACAGAGTGTGGGTGTAGCTGTAACTGAAGTGCAAGATGTGGAGTTTAAGCTTGCTTACTTTGAAATTAAGGACAAAGTTTACACGCAACAGCAGTTGCTCGAAGTTGCTGTCAAACATTACTCCAGCCAGGCGATAAAGCAGATGTACGTGCTGGTATTAGGACTGGATGTGTTGGGAAATCCGTTTGGTTTGATTACTGGACTCAAAGAAGGAGCCATCGACTTATTTTACGAACCATACCAGGGTCTCATTCAGGGTCCTGGTGAATTTGCTGAGGGACTGTATATCGGTGCCAGGAGCCTGTTAGGACACACAGTTGGTGGCGCCGCTGGGGCAGTGTCGCGTATTACCGGCACGCTGGGAAAAGGTATCGCAGCACTCACAATGGACGACAAATACAAACATGAGAGGAGACAGGCCATGGGAAAGAAACCTACCGGCGTCAAAGAAGGACTTACTAGGGGTGGGAAGGGACTGCTGGAGGGCGTTGTTGGTGGCGTGACCGGCATTGTGACGAAACCAATGGAAGGCGCGAAAGAGGCCGGGACAGCTGGATTCTTAAAGGGCCTGGGTAAAGGTGTTGTGGGCGTTTTGGCTCGTCCCGCCGGAGGCATAGTTGACTTTGCAAGTAATACTCTGGAAGGAATTAAAGGGTCCGCTAGCACCGGAAGTGCTGTGCGCCGTCTTAGGCCACCAAGGTGTTTCCACTCTGACAAGGTGATCAAGCCTTACAATTTATACGAAGCGCAAGGAAACGCCATCCTTCAGGTAGAATCGCTCACGTTGTTTTCCTTACGATCTGATGGTTATCGTGTGCTTCCCCGCTTGCCCTGTTACTATTTCTTAGCGGTAATTGCGGTAATGTTGTCACGTATCATAACTTTTGAGGCCGTTAAAACGTCCCATCTTTTTTCGTCTCCTATTCCATCTTGA

Transcript

BRAKERYMET00000026053

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BX70	Intermembrane lipid transfer protein VPS13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2
Q709C8	Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1
Q9BGZ0	Intermembrane lipid transfer protein VPS13A OS=Macaca fascicularis OX=9541 GN=VPS13A PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09333 all species →	ATG2-VPS13_C	ATG2/VPS13, C terminal domain	Domain	Interproscan
PF21679 all species →	VPS13_C	Intermembrane lipid transfer protein VPS13, C-terminal	Domain	Interproscan
PF06650 all species →	VPS13_VAB	Vacuolar-sorting associated protein 13, adaptor binding domain	Domain	Interproscan
PF16909 all species →	VPS13_DH-like	Vacuolar-sorting-associated 13 protein, DH-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015412 all species →	Domain	Atg2/VPS13, C-terminal	Interproscan
IPR049424 all species →	Domain	Intermembrane lipid transfer protein VPS13, C-terminal	Interproscan
IPR026847 all species →	Family	Vacuolar protein sorting-associated protein 13	Interproscan
IPR009543 all species →	Domain	Vacuolar protein sorting-associated protein 13, VPS13 adaptor binding domain	Interproscan
IPR031645 all species →	Domain	Vacuolar protein sorting-associated protein 13, DH-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16166 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0045053 all species →	Biological Process	protein retention in Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000026053.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.