Gene detail

Detailed information of BRAKERYMEP00000026076.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029197633.2, LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 1-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000026076

ATGATGAGGCACACAAAAGAATGTGGATCTGGTCACACTTTGGGATATGCAATTAATTCCCAGTGTCGATTTCAAAGATTTTGGATAGTAATaacagcaaaacaaaccaacaaaaaacaGGAATCCACTAGTGAAAAGGATTGTGCAGCCATTAAAAGGCTTTCAGAAACCATTAGCTGTCCGTCAAATTTCACTGGTGACACATGTGAACAAGATGTCGATGAGTGTTCAGTGCTGGCCAGCCCCTGCAAGAATGGAGGAACATGTACAAACCAGATTGGTGGTTATGTTTGCCGTTGCATTGATGGCTGGGCTGGATTTGATTGTGCCATTAACACAGATGACTGTGCGTCATCTGATGTTCAACCCAAATGCTACAATGGTGGAACCTGTCTTGATGAAGTGGGCAAATTTTCTTGTCGGTGCCCTGCTAATTATTCAGGTCTAACTTGCCAGCATGAAAATCAATGTGAGACTTTGAAACCCTGTCATGGAGATGCAAGGTGTTACCCAGATGCCTATGGGAAATACACTTGTATTTGTTCGCAAGGATGGACTGGTGTAAATTGCAGCACTGATGTTGATGAATGTTTATCGGTCAGTAGTGTAGCACCATTATGTGCTCATGGAGGCACTTGTTCAAATACACCAGGCTCTTTCGTCTGTCGCTGTCTTCCAGGATTCACAGGTCAGCGATGCGAACTAAATTTGGATGAGTGCAGTTCTAATCCCTGTCAAAATGGAGGTACATGCTTGGATTACACCAACTACTTCAGATGCGTCTGCAAGCGTGGATGGACAGGGGTGCAGTGTGAACAAGAGATAAATGAATGTTATAGTGGGCCATGCAAAAATGGAGGACAGTGCCACGACTTAATTGGGGGGTACAACTGTACCTGCGCACTGGGCTATGGTGGTACAAACTGTGAGATAAACATTGATTATTGCAATCCTAACCTCTGTCGCAATGGTGCCACTTGTACAGATGGTATTGTGAACTACACATGTTCATGTGCCACTGGCTTTACTGGTAGAAATTGTGAGACAAATATAAACGACTGTCAGTCCTTACCCTGTCAGAACTATGGAACATGTGTAGATCGGATTAATGACTATAGCTGCACCTGCGTTCCAGGATTCACTGGAAGGAATTGTACAACATGTGAACACAATATCAATGATTGTGAAGGAGTGGTGTGCAAGAATGGGGGAACCTGTAGTGATGGGCTCAATGCCTATTACTGTAACTGTCATCCCGGATTTCATGGGCAGCATTGTGATGTCAACAATGATGAGTGTGCCTCATCGCCTTGTAGGAATGGTGGTACATGTTTTGATGGTGTGGCCCAGTATCATTGCCAGTGCAAAGGTGGCTACACAGGTACAAGCTGTGAAATCGTAGTCGACAATTGCCTTGGAAACTTCTGCCAGTATGGAGCAACTTGTAACTCTCAACAGGAAGGTTACACATGTAACTGTGCCCCGGGGTACAGTGGTCAGTTTTGTGAAATTGACATTGATGAGTGCCTGTCAAACCCATGTAAACATGGACACTGCAGAGATGGTATTAATCGGTACATGTGCACCTGCAATGCTGGATACACTGGCACTCATTGTGAAATCAATATCGACGACTGCCAATCCAGtCCTTGCTTACATGGATCAACATGTGCTGACAAAGTCAATGACTTCTTGTGTACATGCCCACAAGGATTCTCTGGAAGGAGGTGTGAACACCATATAAACGAGTGTCTGTCGCTGCCCTGTCAGAATGGAGCAACTTGTGTGGACAAAATAGGATCTTACAGCTGCTATTGTAAACCTGGTTATATTGGACTTAACTGTGAGAGCACAATTGATTGGTGCCAAAATCTTCCCTGTAAAAATGGCGGTACATGTAAACAAACTGGAATTGATTTTCAGTGTAACTGTCCTCCAAGATTTACGGGTGTTATTTGTGATGTAGAAAACATAACTTGTGCCATGGCATTGATAAAGTCCAGTGGAAGTGATGTTTGCCAAAATGGTGGAACATGCATTGATCAGAACAGCATACAATCCTGCATGTGTCCTCCAGGGTTTACAGGGAGCTACTGTGAGGTCAACATCAACGACTGCGCTAGTGGACCTTGTAAGAATGGAGCTAATTGCAATGATGGAGTGGCAAACTACACTTGCAGCTGTATTAAAGGATTCGCTGGAAGAAACTGTGATGTCGACATTGATGACTGTGCTGGAAACCCGTGTCGAAACGGTGGGACATGCACTGATCTAGTGGATGGTTTTGTTTGCTCCTGTCGTTTGGGTTATGTTGGAAAGACTTGCGAAACAAACCCAAATGATTGTTTTTCAAGTGCCTGCTTCAATGGCGGATTCTGTCAAGATGGTCTGAAAAGCTTCACCTGTCAGTGCCCAGCAGGTTTTTCTGGACTTCGCTGTGAAGTTAATATTGATGAATGTTCGTCAAATCCGTGCTCTCCTCTTGGTACTGAAAAGTGTTATTCCTCAGTGAATGATTACCGCTGCAAGTGTAAATGTGGATTTTATGGGAAGAATTGTGATGTCAATATAAACGAGTGTCTGTCAAATCCGTGTCAGAATCATGGCCAGTGTGTAGATGGTTCCTGCCGACATACTTGCTTTTGCCCCCATGGATTCACCGGGGTAAACTGTGAACGGGCTGTTTCGTCCTGTGCGGATGACCCTTGCCTTAATAGTGGCACTTGTCAAACCTATGCAAATGGAAGCTATGCTTGCACATGCATGCCGGGTGTTACTGGTAAACACTGTGAGATGAATGTAAATGAGTGTGATTCGTCCCCTTGTCATAATAAGGCAACATGCGTGGATGGATATGGTTCTTACTCTTGCATATGTCCCTTGGGATACACTGGAAGGATGTGTGCACTCAAAATAAATGAGTGTGCCAGCTCACCTTGTCTGCATGGTGCTACATGCCAAGACCACATGGGTTACTACAGGTGTAATTGTCCAGCCACACACAAAGGAGCCCGTTGTGAAACAGAAATTGGTTGTCCCTTTAATGACTGTGCTAAGGAATTTAATGGTGAAGAATGCAAGGAAAAGTGTAATAATCATGCTTGTAACTACGACGGCACAGTTTGTTCCCTTGGGGTTAAGCCATGGCAAAATTGCACCGCGGTGACATCGTCCGGGGAGTTCTGTTATAATGTCTTTAAAGATGGAAAGTGCAACCCGGAATGCAATACGGAGAAGTGCCTGTTTGACGGATTTGACTGCATAAATAAATCAGTTTGCAGAAATGAACAATATTGCGCGGACCACTTTGGCGATGCTCAGTGTGATCGATCGTGTAACACTCGAGGATGTTTAATGGATGGATTGGATTGTTCGATCGAAAAGCCGCAGTTGGCGGAAGGAACCCTTATACTGGTGCTGCGTGTTACCCCTGACGTTTTCAAGACAGGTGCGAGACTTTTTATGAGGAGTCTATCTGCGTTGTTGGAAATCATTGCATTTATCAAAAGGAACGGCGAAGGGCAAATGATTTTCTCCCGTGAGCTTGACACTGTACAAGCGCGCTCGCGACGAGGAGTGCACAGAGCAATGCATGTCATTGTCCGGCGAGCACAGTCTGGTGAAGGGCTAGCGGTGGTGGGAGATTATAATTTTCATGTGGACGTCACAACGGACCGTGAAGCTttaaaattcttggacctaatCGATTCGGCTGGTTTACAGCAGTGGGTTCATGTCCCTACACATCGCAATGGGCATACGCTTGACCTTATTATGGATCGGCAAGACCAGACTTTGTCACCACGCTCTATTGAGACTCAGACGGATTTACCTTCAGACCATTTTGCAGTCATTTGCAGTATAAACATAGCTAGACCTAGTCTAGCAAAGAAGGAGTTCACACGTCGTAACATTCACAGAGTTGTTCCTGACTCCTTGCGAAGTGATCTGTTAGCATCGCCATTGTTAACGCCTCGTGACAATAACGTCACAACTGAGACCTACAATCGTGTGCTACGAGAAATTTTGGACAAACATGCTCCTATAGAAACACTTACTATCACACTACGTCCAATCGCACCATGGTTCTCGTCTTCTGAAGATCTTCGTGTCTTGAAGCGTGATAGGCGGCGTCTTGAGCGCCAGTATCGTATGTCTGGTCTAGAAATTCACCGGCAAATGTATAAGGAGAAGTGCCTGGCCTATAGGGATGCTCTTGACCAAGCGAAAGCAAATTACTACAGCAATAAGATCAGGGACTCGGACACAAATGGATTATTCCGTATAATTGATGGGCTTTTCAAAGTCAAAGCTATCTCTCCACTTCCAACTCATGACTCTGTTTTAGATCTTGCTGAGTCATTCAGTAGCTACTTTAACGAGAAGATCCTCAAACTACGAGATACATTATCTAGTCGTACAGAATTGACTCATTTGTTGACTAAGGAGCCACCATGTAGTAGCTCATTCATGAAATTCGAAACTGTGTCGGAGAAGTTTATTCGTGACCTTGTGCTGAAATCTCCAACTAAGTCTTGCAGCCTGGATCCAATTCCCACGGCTGAAAAAAGCCCATCGCCTCCCACTGAAGGCCCAGTTGGCGGTGAAGTGCCCGCGTTATACATTGCTATAATATGTGTGGCAATCCCCTTGTTTATTGTCGGGGTGTTAGCGGGTGCCAAGAGGGTGTACGCAAAGTTATGGGTCCCTGAAGGATTCCCGCGACACAGGCACCGTCGACAGGCCTCCACAAGGAGGGACCCTGTCGGACAGGAAGTCTCTATGAGATCAATTAGCAAACATTCAGAAATGGAAGAGAATGGTGCTAGTGCGGATGGCGAGAGTAGCCGGTCGGACCTGACCCCACCCAGGGAAGCGAAACGGGTTAGACTACATGAGAAACACGTGGGAGAAGATTCACGCCAGTGGACCAGTTTACATCACCAAGTTGCAGACATGACGGCAAGAAACTGCCAACTTGCTCTTACCCCACCCCAGGAGGGAAGTGGCGAACGAGGAGCATCGGCTATCGATGTGGATGCCAAAGGCCCCGGTGGCATGACTCCGCTGCATTTGGCGGCATGCCGCGGGACCTTTGGCGATGGAAGCAGCCTTGACGATGACAAGGATAGTGATGATAGCGGAGCTGCTATGGTGTCCGATCTACTGAATCTCGGGGCAAAGTATTCGTCGAAGACTGATCTGGAAGAGACACCTTTGCATCTTGCGGCTCGTCATTCAAGAGCTGATGTCAGCAAGCGTTTGTTGGACTCCGGAGCCGACGCTAATTCGCGTGACCGCCTAAATCGTACACCTTTACATCTTGCTATTGGAGCTGATGCACAGGGCGTATTTCAGATCTTACTCAGAAATCGTGCTACGGACCTCGAAGCAAGAATGGATGACGGCACTACACCCTTGATTCTCGCTGCGAGACATGATTTACCGGAACTGGTGCGACATCTTATCAAAGCGGGCGTGAAAGTTAACACCGCAGATAATCAAGGTCGAACAGCACTGCACTGGGCAGCCTCTGTCAATAGTTTAGAAGTAACAAAAGAATTGCTAAGAAATGGTGCCAAGAAAGACGCGCAAGATGAAAAGGGCCAAACACCGTTATTCCTTGGGTGCAGAGAGGGAAGCAATCAGACGGTGCGACATCTGTTGGTGAACTATGCTAACCGCAAACTCGCCGATAATATGGATATGACGCCGGAAGATATCGCCAAACAAAGGCATCACCACGACATTGTGGAATTGCTTACGGACTGGTCACTGGGTTGCAACTCTCCCAAGGCCGTTCCTGCCCCGACATCACCCCCTGAGGGGCATCAATCACCCCTGACGAGCATGGCCTCTCCGCCGGCCACATCTCCACCTGCGGTTGAGATTCACAGTGGCAACGGCTCTGCAATGGTGGCTCGCTTCCAAGCAGCGCGTCCTAAGACGACGGCTACAAGTAGAGCGCAAGGCACTCCACGGCAAAGAGCCAATGCTCACGGAAATAGCAATAACAGTAATACTAAGCGTAAGAGGAAGAAGGCAAGACCTGATGAGGAATCCTATCCGGCAATGACTTCAGTGACGACACTATCACCAACGACGTCTTTGTCTCCGACGGCCAATAATGTCGTGACATCTTGCGCGACCGGACCGACTTTCTCACCGAACTGTGTGCCACTGACAAACGGATTGTCTCCTTTAGGAAGCGCAGGCATTTCACCCGCGGATTCCACCACGTTTTCGCCAGTTCAGGCGCCGAACTCGCTCGATACACAAGCACCGCCGTCACCACTAGAAATCTTATCTCCGGATGACCTCGCTGATTTGGAGATAAATGGTTGGGATGACCTGGATAACATCGTTCCGTTCGATGATCCTACGGACCTGTCTTTGTGTGGGTTTCCACCTAACACTGCCACAGGAAACTTGGATGTTATGGACCATATTGTACCAACCACCTCAGACTGTATGTATATGCCTAATAATGCGCCCCCGATACGGCGCTTGGACCCGCTAGAGGGTCAAAGACTATATTCTGTTCAAAGTACGCCGGACTTAAATCGCGGGCCTCTACAGCACCACGACCCCCGGCCTTTTGTATTAAATGGAAGGACTTGCAGCTCGGCACAGAAGGCGCCACCAATGCCTTCGCAGCTGGCCTCGTACCAGGCCATCACGAATTCTAATATGTACCCGGGTGGTGGAAACTTGATGCCACCAAGGAAAGACTTTCAAAACAACGATTACCCATTGCACCAGCCACTGCATTTACAAAACCAAATCTACATCAGAGGAGGACAGCAGCCTGTACGTACTTTGGTGCATGCCGGGTATGAGTGCGTCTCGCCACAAAAGCCTCTTTCATTCCCCACCCCATCCCCTGACTCACCGGGGCAGTGGTCATCCTCATCGTCGTCTTCCTCGTGCTAG

Transcript

BRAKERYMET00000026076

Protein

BRAKERYMEP00000026076.1

MMRHTKECGSGHTLGYAINSQCRFQRFWIVITAKQTNKKQESTSEKDCAAIKRLSETISCPSNFTGDTCEQDVDECSVLASPCKNGGTCTNQIGGYVCRCIDGWAGFDCAINTDDCASSDVQPKCYNGGTCLDEVGKFSCRCPANYSGLTCQHENQCETLKPCHGDARCYPDAYGKYTCICSQGWTGVNCSTDVDECLSVSSVAPLCAHGGTCSNTPGSFVCRCLPGFTGQRCELNLDECSSNPCQNGGTCLDYTNYFRCVCKRGWTGVQCEQEINECYSGPCKNGGQCHDLIGGYNCTCALGYGGTNCEINIDYCNPNLCRNGATCTDGIVNYTCSCATGFTGRNCETNINDCQSLPCQNYGTCVDRINDYSCTCVPGFTGRNCTTCEHNINDCEGVVCKNGGTCSDGLNAYYCNCHPGFHGQHCDVNNDECASSPCRNGGTCFDGVAQYHCQCKGGYTGTSCEIVVDNCLGNFCQYGATCNSQQEGYTCNCAPGYSGQFCEIDIDECLSNPCKHGHCRDGINRYMCTCNAGYTGTHCEINIDDCQSSPCLHGSTCADKVNDFLCTCPQGFSGRRCEHHINECLSLPCQNGATCVDKIGSYSCYCKPGYIGLNCESTIDWCQNLPCKNGGTCKQTGIDFQCNCPPRFTGVICDVENITCAMALIKSSGSDVCQNGGTCIDQNSIQSCMCPPGFTGSYCEVNINDCASGPCKNGANCNDGVANYTCSCIKGFAGRNCDVDIDDCAGNPCRNGGTCTDLVDGFVCSCRLGYVGKTCETNPNDCFSSACFNGGFCQDGLKSFTCQCPAGFSGLRCEVNIDECSSNPCSPLGTEKCYSSVNDYRCKCKCGFYGKNCDVNINECLSNPCQNHGQCVDGSCRHTCFCPHGFTGVNCERAVSSCADDPCLNSGTCQTYANGSYACTCMPGVTGKHCEMNVNECDSSPCHNKATCVDGYGSYSCICPLGYTGRMCALKINECASSPCLHGATCQDHMGYYRCNCPATHKGARCETEIGCPFNDCAKEFNGEECKEKCNNHACNYDGTVCSLGVKPWQNCTAVTSSGEFCYNVFKDGKCNPECNTEKCLFDGFDCINKSVCRNEQYCADHFGDAQCDRSCNTRGCLMDGLDCSIEKPQLAEGTLILVLRVTPDVFKTGARLFMRSLSALLEIIAFIKRNGEGQMIFSRELDTVQARSRRGVHRAMHVIVRRAQSGEGLAVVGDYNFHVDVTTDREALKFLDLIDSAGLQQWVHVPTHRNGHTLDLIMDRQDQTLSPRSIETQTDLPSDHFAVICSINIARPSLAKKEFTRRNIHRVVPDSLRSDLLASPLLTPRDNNVTTETYNRVLREILDKHAPIETLTITLRPIAPWFSSSEDLRVLKRDRRRLERQYRMSGLEIHRQMYKEKCLAYRDALDQAKANYYSNKIRDSDTNGLFRIIDGLFKVKAISPLPTHDSVLDLAESFSSYFNEKILKLRDTLSSRTELTHLLTKEPPCSSSFMKFETVSEKFIRDLVLKSPTKSCSLDPIPTAEKSPSPPTEGPVGGEVPALYIAIICVAIPLFIVGVLAGAKRVYAKLWVPEGFPRHRHRRQASTRRDPVGQEVSMRSISKHSEMEENGASADGESSRSDLTPPREAKRVRLHEKHVGEDSRQWTSLHHQVADMTARNCQLALTPPQEGSGERGASAIDVDAKGPGGMTPLHLAACRGTFGDGSSLDDDKDSDDSGAAMVSDLLNLGAKYSSKTDLEETPLHLAARHSRADVSKRLLDSGADANSRDRLNRTPLHLAIGADAQGVFQILLRNRATDLEARMDDGTTPLILAARHDLPELVRHLIKAGVKVNTADNQGRTALHWAASVNSLEVTKELLRNGAKKDAQDEKGQTPLFLGCREGSNQTVRHLLVNYANRKLADNMDMTPEDIAKQRHHHDIVELLTDWSLGCNSPKAVPAPTSPPEGHQSPLTSMASPPATSPPAVEIHSGNGSAMVARFQAARPKTTATSRAQGTPRQRANAHGNSNNSNTKRKRKKARPDEESYPAMTSVTTLSPTTSLSPTANNVVTSCATGPTFSPNCVPLTNGLSPLGSAGISPADSTTFSPVQAPNSLDTQAPPSPLEILSPDDLADLEINGWDDLDNIVPFDDPTDLSLCGFPPNTATGNLDVMDHIVPTTSDCMYMPNNAPPIRRLDPLEGQRLYSVQSTPDLNRGPLQHHDPRPFVLNGRTCSSAQKAPPMPSQLASYQAITNSNMYPGGGNLMPPRKDFQNNDYPLHQPLHLQNQIYIRGGQQPVRTLVHAGYECVSPQKPLSFPTPSPDSPGQWSSSSSSSSC

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04721	Neurogenic locus notch homolog protein 2 OS=Homo sapiens OX=9606 GN=NOTCH2 PE=1 SV=3
O35516	Neurogenic locus notch homolog protein 2 OS=Mus musculus OX=10090 GN=Notch2 PE=1 SV=2
Q9QW30	Neurogenic locus notch homolog protein 2 OS=Rattus norvegicus OX=10116 GN=Notch2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003340 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00066 all species →	Notch	LNR domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF06816 all species →	NOD	NOTCH protein	Family	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR035993 all species →	Homologous_superfamily	Notch-like domain superfamily	Interproscan
IPR051022 all species →	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000800 all species →	Domain	Notch domain	Interproscan
IPR010660 all species →	Domain	Notch, NOD domain	Interproscan
IPR008297 all species →	Family	Notch	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049 all species →	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0050793 all species →	Biological Process	regulation of developmental process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02599	NOTCH1; Notch 1	-	Endocrine resistance	ko01522	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.