Gene detail

Detailed information of BRAKERYMEP00000026686.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_042896308.1, zinc finger protein 69-like, partial [Parasteatoda tepidariorum]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000026686

ATGTGGAACCTTCTGATAGGAAGGCTGGCTGAGGAGAAGTATGAACATCTTGAAAGAAGGAACCTCCCACAAGAGGAAAAGAACGGGTGCCATAAACTTTCTACAGGAACAAAATATCACCTGCTGATTGACAAGATGAAGATTAAGGCTGGTTATGACCTGGGGGAGGGGAATGGAGTCATCAATCATCTCTTCTTTATTGATGATCTTGATATCTATGGGAGGAATGAAAACAAGGTTGACACACATGTGCAGTCAGTTGGAGTTGTGTTCCTTGATGAGAAGCATTGCTGTGGAATAACCGTTGCTGAAAAAAAGATTTACATGGCGTCATCAGAATGTAGGTACTgcggaaaacgttttaaaaGAAACCACGTTCCTGCAGGACACTTAAGATTAGAGTGTAAAGGAAAGCCGTTCAGTTGTAACCGATGTGGGACATATTTTACCCGTTCGGATGCACTTGCTAGGCATAAGAGAGCTATTCACAAAAATGAGAAGTTCAAGTGCAAAAAGATTTTCATAGGGCACAGCCAAGCAAACTCTCGCCGGCAACATCAGAGAACTCACACGGGTGAAAAGCATGGAAAAGTCAACGAAAAAACGCGTAGCAATGCACGTCAGGAGAAAAAGCTGAATAGATGGAAGCATTGCAGTAAGTGTTTCAACAGGGCATCGAATTGTAATTGTTACGAAAAGTGTCGCACAGAAGAGACAACTCGTCAATGCGAACAGTGCGGCAAACGTGTGCACAAGTCGAATATTGCGCGTCATAGAAGGATTGTACACAAAGCAGAGAAAGGTTTTAAGGGGCTGCCTGGGGGGAAAGGATTTACAGATGTTCGAAGGAGGACGCAGCGCGAAAACCAGGACGCAGGGAAAGGGCGACCAGACGAGGAACGACGACGTTTGAAATGCAAGCAATGTGGGCGATGTCATAAGGGTGAGCACCGTTGCGAACCAGCGCAAATAGTACACTCACGGAAACGACCCCGTATATGTGAATATTGTGGAAAGCACCTAAGCTCATCCTCAAGCTTAGAAAGGCACATTCGCATTCACACAGGTGAAAAACCATATAAGTGCAGTTACTGTGGCATTCGTTTTCTTGATTCAAGCGCACACAAGCGCCACGAAAGGGCACACAATATAGGACCATCCCACAAACGGACTGAGCAGTATGCTAGGAGATCAAAGGACCTCGCGAAGCCTGGCAGAGCGAAAGCAACAGAAACGCGGGGAAGCGTGGTAGCTGCTGTTCAAAGGCCACAACAAGGGCGGATAGAAACGACCACAAGCAATCAACGACGTTTTCAGTGCGAGCAGTGTGGAAAGAGTTTTCCACATCGTTATAGGTTAGTGTTACACAACAGGATTCACACGGGAGAAAAACCTTATCAGTGTCAATACTGCGATAAATGGTTTGGGGCGTCAAGTAGTCGGAGGCGACACGAGAAAACCCACAAACGAGTGGCCCCAGTAAAGAATAGCCAGCGCGCTTTTCAAGCAAACGGGCCTGGAAGTCAACGAAACGATCGCTCAAAAACGCGACGTTTCCAGTGTGAATACTGTGGTAAGTGCTTTCGCTTAAGATGTCAACTAACACAACACACTAGGGTCCACACAGGAGAGAAACCCTATCAATGCAGTTATTGTGATAAGCGGTTCAGCGTTATGAGTAACAGGCTACGGCACATGAAGACGGTACACGGAGAGGTCACAAGTAGTCGGCGGCGAGACGAGAAAACCCACAAACGAGTGGCCCCAGCAAAGAAAAGCCAGCGCGGTTTTCCAGCAAACGGGCCGGGAAGTCAACAAAACGATCGCTCAAAAACGCGAAGTGTCCAGTGTGAATATTGCGGTAAGTGCTTTCGCCGAAGATGTCATCTAACACAACACATTAGGGTCCACACAGGAGAGCAGCCCTATCAATGCAATTACTGTGATAAGCGGTTCAGCCTTGTAAGTAACAGGCTACGGCACGTGAGGACGGTACACAAAGAGGTGACAACATTAAAGAGAACACTACAAAGCACTCACATTAACAAACCAACAAGTCAAGGTCAACGTAATACTGATAGAAATAAGGGAGTCGAGAGTCATTACTTAAAAAAGAGACTCTTTGGTTGCACACACTGTTCAAAACGTTTCCCCAATCGAAGTGAACTAGATAAACATGCAAGGACCCACTCAGAAGGgaaacattttaaatgtggTTACTGCAACAAGTGGTTCAAGTCTGAATCCAATATGCGGCGACACGAGAAGGTTCACCCAAGACGGGCGCCAGTCGAAAAACAGGAATCAAACTGTCTAACACACGTGTGTTGGATTTGTTCCGAGGTCTTCCGGAATGAGGTTATGCTTCGTAAACACTACGATGACCATATGGCTTATCTCAAGCAATTAGAAGAGGAAACCGAGGAAAGAGCTTAA

Transcript

BRAKERYMET00000026686

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P80944	Zinc finger X-chromosomal protein (Fragment) OS=Sus scrofa OX=9823 GN=ZFX PE=3 SV=1
Q29419	Zinc finger Y-chromosomal protein (Fragment) OS=Sus scrofa OX=9823 GN=ZFY PE=3 SV=1
Q6B4Z5	Zinc finger Y-chromosomal protein OS=Pan troglodytes OX=9598 GN=ZFY PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001858 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12171 all species →	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	Family	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR022755 all species →	Domain	Zinc finger, double-stranded RNA binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24376 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.