Gene detail

Detailed information of BRAKERYMEP00000027127.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044174205.1, LOW QUALITY PROTEIN: NFX1-type zinc finger-containing protein 1-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000027127

GTTGTGACTTACAAGAATCACGCATTGGACAATTTCATCTTGGGTTGTGTCAAAAAGGTTTTGTCGCCGGATGTGAAGATTGTTCGCGTTGGAAGGTTAAATGACGATGCCGATTATAGGTTGAGAAGATGCCTGTTGGGAGAGGTGGGGCATCAATGGCCTGAAAAGTTGTAcaagcagaaaagaaagcttttggGACAAATTTGGGCATTACAGCCTAAAGTGAAGGAAGCGTTCGAGAAGCTCAGATATTCAAGCAGTTTCACTGTAGATATGTTCTTGAAGGGAGCACCGATTGGTTTGCTGAGGAGTCTGTTGGTCGAAAATCAAGCACAGAAGAATACAGATGAGGCAAAAGTGGATAAATTGATCAAGGAACGACCTAAAACTGAGGCCAAGCTTAGAGGTGATGGTCTTCGTTttatagaacagttttcaaagacAAGAGGTTCTGTTTCACTTATCCACCTTTCTGACAGGACTGACTTGTCAGTCAAAGTAGtgGTTGAGTTGTTTTACTTTGACGCTCACTTCAACTTTAGCTCTCCCGGGAAAGgcaaaggaaagagaaaagatGACCAGGATCATTTGGAAAATCCCAGTGACTTTAATGACCCATCAGTGGAACAAAAGGAACGGCTTCTTGCCTTGGAGGAAGATATCATTGATGAAGAAGACAAAGAGATCGCAAAAATAGAGCCTGAGGCATCTGAAGACTCTGCCGCGGTGCCTTGTCTACGTACCCTTGCTTGCATCGATAAATCAGAACTGAAGTCATTTAAGAATCTTTTGAATGTTAGTCGCATTTGGAAGCTGAATGACAATGAAAGGGTACAGCTTGTGTACTTCCTTCAAAGTGAGTTTTACGCCAAAGCCAGGGATGAGTTCTTGGCTGTCAGCAAGGATTATTCACAGTTGCATCACCAGCTTAAGGAACTAAGGGAGCAGCACGACATTGAGGTCATGAGGAAATGCCATGTTATAGGAATGACAGTTACTGGTGCCACATTGCGGGCAAACTTGTTAGCTGATATCAAGCCTTCAGTTATGATTGTGGAGGAAGCTGCAGAGATTCTTGAAGGACAGCTTGTTGCTGTTATTCCTCCTTCTGTTCAACACCTTATCATGATCGGAGATCACATGCAATTAAAACCGGTGGTGCACTTCTTTGGACTCAAGAAACATCACCATCTTGATCTGTCTATGTTTGAGAGACTCATGAACTGTAAGCTGCCTTTTACGCAACTTAAATACCAGTGTCGAATGAGAGACGAATTTGTCGATTTGCTCCGCGAACTGAAGATATACAAAGAGCTCAAGACAAATAAGGAGCTCGTGAAAGGGAATGATAAACCTCGTATTGTAACCAGTAGCATGTACTTTTGGACGCACACCGTCTGGGAAAGTAACTTGCCAAGCTCGCACAGCAAACGAAATTCTCACGAAGCCAGGGAGATTACAAAGGTTGCGAAAACTTTCTGCCAGGAGGGTGGGGTTCTACCAGCGGAGATTACAATTTTGTGCTCCTATCGCGGCCAGGTTCTTGAAATAAAGAACCAGTTTCAGTCGGAAAAGTTTGCTGCCTTGAAAGACATCGAAGTCACGACAATTGACAGCTTTCAGGGACAAGAGAATGATATAATCCTCATTTCTTTGGTTCGTAGCAATCAGTTGACACAAGGAAAGATAGGGTACTTGTCGTCGATGAACCGTTTGTGTGTAGCAATATCCCGAGCGCGCTGTGGTTTGTATCTCTTTGGCAACCATACACACTTTGCGGAAGCTTCAAGAAAAGGCTGGAAGGTTGTAAGTGAAGCGATGCGAAGGAAGGGATGCCTTGGCCGTCGATTTCCGTTTAGCTTAGGTGAAGATTCAAATCCCCCAAGGCAAGTCGAGAGTCAGCCAGATGGGAGTTCTCCTACAAGACAGACGGAAGCCAAACAAGTAACCAACATCACAGCCACTACCGCCTATATTAACATCGGAGGAGACAGTTCAGTGAATACCATTAATATGAGCTCAGttccTCCGAATGTTGCTTCACCCGCAGCACGTTTAAACGTACGCTTTCCTGGTTCTGGGAAGACACCTGTTCAGGACCCACAGTCACCTGCACCAGGGGTGGGGGGCTACCGACCGCCAGCTCTGGGTGTACCCACTCAAGAGGCTTGGTCGGAGACTCTTGAGGTGGACTCACCGATCAAGGACGCAAGAGACCCCATCCAGGCGGTTGACCAACCTTCAAAAGATGCCGGGTTTCCTACTCCAGAGGCACAGTCGCCGACCAAAGAGGCCAGAGAGCCCGTCCAAGTCAGCACGCCAAAAAGTTGGGCCGAAGAGGTGGAGCCACCCATCGCAATTGGTCAGGACACCGACTCACCAACCGTACAGGTTAGATTAGCCACTGAGGATGCAGAGTCAGTCGTCCAGGAAGTGGAATCGCCCACAGAGGAGGCCAGAGAGCCCATCCAAGTCAGCACGCCAAAAAGTTGGGCCGAAGAGGTGGAGCCACCCATCGCAACTGGTCAGGACAAACAGGACAAAGTCAGGACAAAGGAGGCCAGAGAACCCATCCAAGAAGTTAGCCCACCCAAGATGGGAGCTGGTTCGCCTACTCAAGTAGCAACAGAAGGCGAGAGACCTCTTGGTCTAGGTGAAATGGAGAGCCCAACAGAAAGGCCTATCAGAGTGGAAAACGTGCCTCAAACGGGCATTGAGCAATTAGCAAGTGAAGACGGCTCGACCGGAAGCCCTGTGGAAGAGAGTAGGGAGAGTCAAGGTGAAAACAATGAGTTTAAGGTTGATCCCGGAACAAGCCCCAGGCATGTTTTTCAGGAGGGCGACATTAAAGACCTTTCCAAAGCCAAGACGACAGTCGAAGAAGGACCCTTCCAGGAAGAAGAGCTGGTCTCTTTGAAGCCAGAAGATTTTGAAGAATTCGAAAAAGAAAAGCCATTACAAGAGACGGAGGAGACTGATAAAGGGGAGGAAGAACTATCTGGTGGGAAACCTCTGCAAGAGATTGAAAGCCCTGACGTCAAGGGTGAAAGTTCAAAAGAAGTAAGTACACCCGCTCAGGAATCTATGGCCGCGGGTAAAGGGCCATTTGAAGAGACTGGGCAGGAGGAAGGAAAAGCTCTACAAGAGACAGGCAGACCAGGAGAACCTCGTGCAATGCTTGGAGATGAATCTTACTCAGGTGAAGGAGATTCTGGGATAAAAGGAACTGAGAGCTCAAAAGTCGATGCTGGAAGTTCGAAAGAGGATACTCTGCCAACACAGGAGTCGATGGCTGCTGGTAAAGGGCCGTTTGAGGAGACTGGGCTTGAAGTGGGCGTCAAGGGACATCCTTCAGACGATAAAGAATAA

Transcript

BRAKERYMET00000027127

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2E3	NFX1-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNFX1 PE=1 SV=2
Q8R151	NFX1-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Znfx1 PE=1 SV=3
O74465	Helicase required for RNAi-mediated heterochromatin assembly 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hrr1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001094 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031048 all species →	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15254	HELB; DNA helicase B	EC:5.6.2.3	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.