Gene detail

Detailed information of BRAKERYMEP00000027173.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044164527.1, nuclear pore complex protein Nup155-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000027173

ATGCCCGTAGCAGTAGGGACCAGCTCCTTAAGTTCGCTTGTAACTCCGGAGGCTCTGGAAAATGCAGCAAAAGAAGTGGATCGGCAGCTTGCTGCCGACAGACAGTATCCGGAATTGGCCGAACAAATTAACGTTTCGCAAGCTGTGACAAGCTTCAGTGGTGTGAATGACTATGACTATCCTTTCCTGTCTTCGCCTTCTGTTGGTTTGGCTGGCATGGAACTCGTCAGTCTCCTCAAAAGGGTTCCTCTTCCTGCAGAACTGGTTGAACAGTTTGATCATATGCAGTGTAACTGTATGATGGGTCTGTTTCCAGAGATCAGAAGAGCTTGGCTTACTATTGATAGTGATATATTCGTATGGAATTATGAAGATGGGAGTGACTTGGCTTACTTTGATGGCTTGAGTGAGACAATCCTTTGCGCAGGATTAGTAAAACCTAAACCAGAAATCTTGAGGGAATCTGTGAGGTACATTTTATGTCTCACAACACCAATTGATGTTGTTCTGCTGGCTGTAACATTTACGCCAAAGAGATTAGGAAATCTTGCTGATGACGAGTTCGCAGAAATGCATCTTCGCCCAGACCCACTGTTTTCTATCCCCTCGGATAACATCTACTTGACTTGTATGACGGGAACTTTCTCAGGAAGGATTTTCCTTGGAGGAAAGGATGGATGTGTTTATGAAGTCATTTATCAGGCTGCAGACAGTTGGTTTCAAAGAAAATGTCGCAAGGTCAACCACTCATCAGGAACATTGTCTTTCCTTGTGCCCTCATTTTTAAATGCTACCTTTAGTGGAGAAGATGGCATTGCCCAATTGGCAGTTGACAATACAAGGAACATTCTCTACACTCGTTCAGAAAAAGGAACTATTCAGGTTTTTGATCTTGGTTCTGATGGAAAAGGGATGTTGTATGCTGCGTCCCTCACACAGGATAAAATCACGCAGAAAGCTGTATCAACCACTAGAACAATTGATCAGAGTCACTTCAGACCTGTTATTCACATTGCTCCAATTCCAAGGAATGAATCCAAAACTGTTCATCTAGTTGCTATCACCCAGGCAGGAGTGCGACTTTACTTCACTACAGCAACTGCAAGTGTTCCACTCGAAAGACCCAGTAAGCTACAGCTCGTTCATAGCAGACTTCCACCAGGATTTGCACCATCGGCAACCTCACAGAGACCCTCCCAAGTACATGCAGCATTCTACAGACAAGGAATCCTTTTGCTTGCATCATCTCAAACAGAAGATATTGATGTTCTGTGGGGAATCAGTCCTGATCCCTTTCCATTCCAGTCTCCACTCAAAGAAATGCAGGTGACTGTCCCAATGGAAGGAAGAACATGGTCTTTAAGTGAGGTGCCTGGATTTGGAGGCAATACGATCAGAGAATGTCCAATAGTCAGCGACATCTGGCCTGACCCACCAGCTGTTGTCAGACAACATGCTTCCAATCAGAGGTCTTTTGTGGTCCTTAGCGCACAGGGGAGTTACTTGTTTACCACTTATCGCCCAGTGGAACAGCTGCGCCAGCTGTTACTACACAGTCAGGGATTTGACTCGGAGGCTGTGCAAGCATTTTTTAAGCTTCACAAGGAAGACCAAGCATGCGCAACATGCCTTGTTTTGGCTTGTTCTGCACAGGCATCCCAACAGCAGGTTGCTGAGTGGGCGACGAGAGCTTTCTTCAAGTATGGGATCGAGTCCCCAGGGATCACCACAGGAGTGCACCCCTCTGCGACAAGCAGTGGTCCAACCATGGGAAGCCCTGCTTCAAGGGGGGGCCTGACAACCAGCTATATTTCTTCCCCAGGGGTCAGACCTACGTTTGGCAGTCCTGGGTTAGTGACATCCACACCTCAGGTTGGAATGGGTCAGGCTGTGGTGCGACCTGAGCTGACAAGGTCTAGCAAACACGATGGACTTTGCTTGTACTTCGCCAGAATTCTTGAAACAGTCTGGGATGGAAGACTTGTGTTTGAGGATTTCTTTCTTCCGCTCCATTCAGAACCACAACAACCAACACCAGTTCTAAGGAGCATACTCAATGTGGTCCAGCTAGGATGGATTTTGGAAAGAGTGAGGCAGCTTCAAACTTGGATGGAGCAGAATATGCAGTTTATGTTGCCTCATTTGGATGGAGGATTTCCCACAGTAACAATGACTGGTGGACAATCGCTTCTTCAGCAAACACATCAAGCATCAGCTGAGGCATTCGTTGCAGAGAAGAACTTTTTGGTCAATTTTAAGTCTCTGATAGACCGGTCAATTGAGACGTTCATGCTGTGGCAAGTGCTTAATGAGCACAATTTTGAGGATGTTGTTCTTCACCTTGAACCAGCAATAAGGGATCGACTGAAGCACGTCAAGTTTAGAAACCTGATAACCACTGGTCAGGAGATTTGCAGCGCCCTCATCAACTCTCTGGTTATGTGCTACTACGATGACATTGCCTCTACAGATGCTATCAGTGAAAGACTGCGAGATGTTTGTCCAAATTTATTCAGTACTGATGATGCGGTATCCACAAAGGCCGGCGAGCTCTTAATGTTAGCGAGGCGAAGTAGagacaaacaagaacaagaaagaatACTCAGGGATGCCCTTCATTGTTATCGGCGAGTCACTCATCAAATCAACCTAGAGGGCATATGCTCTATGTTtgaatcagTGCGATTCTATGAAGGCGTAGTTGAGCTCACTTTACACGAGGCACTTAAGCGTGATGCCCAGGGACTGGCTTTTCACTTCTACAGGAACGGCGAACCGCATGGTGATATCCAAGGAGAGGAGGCATTTATCGCCAGacAACAGTGTTACAAGTGTATTCTTGACATTCTGCAGCGCcttctggtcttgaaaacagCTCCATCCCAGTCTCCTGGCCGGCCATCACGGCCAGGTCCTCCACCAGCCCCAGACCCCAATGCCCTTAGCTCAAGTGAAGCTGAGAAACATATGGAAGAAATGTTGTCGTTTTCGTTGACCTATGGAGACGAACTGTGGCACGTGGTGCTTTATCAGTGGCTGATTGACAACGCTCTCACCGACAGGTTACTAGAGATCAAATCACCTCATCTGGAGTCATTCCTCAAGCGATCTTCCGCACAGCAGCATCCAAGTGAGCTGAAGATATTGAACCTGCTGTGGCGCTATTATGAAAAGACCAAGAACTACTCAGCAGCCGCCAGGGTTCTCTCCAAGCTGTCTGagaaagaaagTTCCGATGTAACATTGGAGTTGAGGCTGGAGTACCTGTCACGTGCCATCATGAGCGCCAAGAGCAGTAACCTGCGAACAGCGGTCAGCGGTGAAGGGGAGTTCCTTCACGAGCTTGAAGAGAAGCTTGAAGTCGCGCGCATCCAAATGCAAGTTTATGAATCGCTTGTGAGGATTAATGCTTGTACTCCGTCCAGGCATCTCGATCAGGCTTTAGCTGTTTTAAACTCGCGCCTTATGGATATCACGACACTTTATGGAGATTTTGCTGATACCTTTGGGTTGGCGGAGTGTAAACTTGCTATTGTGCATTGTGCTGGGCATTACGACCCCACTCTGATAGAAACACTGTGGAGGGACATCATCGACAGGGAGCTTCACGAGTCACTACAGAGTTCTCCCAGTGATCGAGTGGCCATCGTCAGTAAAAAGATTGCTTCCCTCGGGAAGATGTACGTTCACTCTGAACGGTACTTTCCTCTGGcGGCTATCGTCTTGatgctggaaaagaaaagcgCCGAGTTGGCTTGGGATCCAACTTGGGTCTTCGTCACCATGTTGGAGATAGGTATTCCATTTCCTGTTCTACATGGCATCTACGACAGACTGTTTAAAGCCAAGGACCCTTGTTGGCAAGCGTTAAGCAGACCTCTTCATATCCTTGAGGTTATTTATCATCTTCTTATGAAGTTCGTTAGTACGCCGTCACTTTCCCCTCCTTATGAAAGGTACGTTGCGTTGGCTGTCAGAAGAATCCTCTAA

Transcript

BRAKERYMET00000027173

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75694	Nuclear pore complex protein Nup155 OS=Homo sapiens OX=9606 GN=NUP155 PE=1 SV=1
Q99P88	Nuclear pore complex protein Nup155 OS=Mus musculus OX=10090 GN=Nup155 PE=1 SV=1
P37199	Nuclear pore complex protein Nup155 OS=Rattus norvegicus OX=10116 GN=Nup155 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004512 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03177 all species →	Nucleoporin_C	Non-repetitive/WGA-negative nucleoporin C-terminal	Family	Interproscan
PF08801 all species →	Nucleoporin_N	Nup133 N terminal like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042537 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Interproscan
IPR007187 all species →	Domain	Nucleoporin, Nup133/Nup155-like, C-terminal	Interproscan
IPR014908 all species →	Domain	Nucleoporin, Nup133/Nup155-like, N-terminal	Interproscan
IPR004870 all species →	Family	Nucleoporin, Nup155-like	Interproscan
IPR042538 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 3	Interproscan
IPR042533 all species →	Homologous_superfamily	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10350 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP155	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000972 all species →	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006405 all species →	Biological Process	RNA export from nucleus	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228 all species →	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044611 all species →	Cellular Component	nuclear pore inner ring	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14312	NUP155, NUP170, NUP157; nuclear pore complex protein Nup155	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.