Gene detail

Detailed information of BRAKERYMEP00000027978.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029207938.2, FYVE and coiled-coil domain-containing protein 1-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000027978

ATGGACGCATTTATAATTGACCCAGCTAGACTGATAAGTGACATAGTAGCTTACATTACTGATTTAAGAAGCAATTATCAGACATCACAGCAGCCAGTTACGGATGATGAGACAACGCTTCATAAGTTTTGTGTCAAGCTGGAGACAGTTTTGAGACATGAACAAAAAGAAAGGTACTCACTTCTTGGTGCTAGAAAGGACTATTGGAATTTTATAAGTGACAGCATTCCAAGGGATGATGGAGTGAAATATGTACAGGCTATTCCACAGCTCAAAACACCTCAAGGCAAGGGGAGAGCATTTATTCGCTACTCATTGGTGAAAGGATCACTAGCTGATGCAATCCAAAGATGCCTGGTCACAAGAAGACAATTGAGtgCATGTTACGGATCAGAAGCAATTCTCTGCCACCCATCACTGTCAACTGCCCTGGTTAACAAGCTATATGATTTGAATGACATCGAGTTTGATCTTCCCTGTGCAGGCCTTGAACTGGACATTTCATGGCCAGCATTTTCAAGGAGATCATTTGGTGATGTGCAAGGATCTTTACCTGGAAGAAGGAGCAGTACTAGCAGTTTGACCAGTGTGGATTTAAGGAATGAGAGACCAGACCCTTTAGTTGGCCTGTCAGTTGAAGTTGAAGACCTCAAAGCAATTTTCGGTGATGAGAACTCCCATGGACTGGCAGATTATACAGAGAGTGGTTCCGATCATACAAATGCCACTGATCCAACATTGGCAGAACCTCCCACCATCACTGGAATGACACTGGAAATCTCTCACTTGCATCAGAAGATTCTGAAATGGAAAGCAGACCAGGAATCTCGACTCTCCAAGGCTTGCAATGAGATGAAACAAGCAAATGATAATAGAAAATTTGCCAGTCAAGAGCACGAGTTAAAGATCAAACAACTTCAtgaaaaatacagcaatttAATGAAAGGGGCTTCTGATGGGGCAAATGCTAAAGTGAATGAACTTTCTGCGAAGTTAAGTACTGCTGATAAAGCGTTAAGTGACAGAGAAGCAGAAATCGAGACACTTAAAAACGAAGTGAAAGTATCTGTAGCATCTTCACAAGAAGCACAAAGATCAGCTATTGAGCTACAAAGACAGCTTATGGCTTCTGAGAAAAAACGGACTGAACTTACATCTGCGTGTGAGCATTTCGAAGATCGATTGAAACGCAAAGATGAATTGGCTGGAGAATTAGAGACGAAGCTTTCAGAACTTAAACGTAAGTGTAGCGAACTTGAGTCACTGGAAATGGAGTCCAGCGAGAGAGTTGCCGAGCTGCAGGGGGAGTTGAAAGCCAAGGAGGTGGCCTTAGGGAGAGTTCAAGAGTCTTTTGAAAAGCTAAATGGATTGGTGTTTGGTTCGTTTGAGGAGCTGGAGTCAGAATTGAAGGCTCGATTAGTGGACAGAGAAAGAGGATTAGAAAATCAAAGTGCTGAGAACAGGAGACTGGAAACGAATATTGCCATGGTTCGGCAGCAAAACAGAGAGTTAAATAATAAAGTCACAGAAACGAACACCTCAGTTGAGGAGCTGAAGAATGCCAACAGAGAAGCACAGCTTGTTATCCAAGGCTTGCAAAGTAAACTTAGctcacaagaaaagaaagaagaaaatttctTGACAGAGCTGAATAAAGCATTGCAAGCTAATGGAGATTTTGATCAAGAAGACGGTCGCCATATTACAAAAGATTTTGGTAAAATTTTGAAGCAAGCCAAGCACCTGGTAGCAGAAGTGTCAACTCTTCGCCATCAACTGAATGAGAAAAGCGTGCAAAAGGAACAGCTTGAGGAACATGTGGCAGAGCTGCAAGATAATATTGATAAGAAAACATTGGAAATCATGAATTTATACGAAGATGTCGATAGTTCCAAGAAAAGGATCGAATTCATCAAAGAAGAAAAGGATCTCCTTGAAATGGAAAAAATAGAGACAGGCAATAAAATTGCTGCACTCGAAGAATCCGAAAAGTCCTTGAAGTCCAACATTTCTTGTGTTGTGGAAGAAAAATCCAGAAATCTGAATGAACTGTCGCTTTTGCAAGACCAACGTGAAGAAGAACAACAGCTGAGACTGACAGCACAACGAGATTTGGCGGCGCTAAGAAATCAGCTCGAAGAGACTGTTGAATCGAAACACAGGCTGGAGGAAGAATTGGCAAATATCACCGATTCTCTTGAAACCGTGGACACGGAGAAAAAGCAGTTGGATGGCGAAATGAGAAGCTTAGAGGATAAAATGTCAGCTTGCCAAGACGAAAGAATAGGTCTGGAGCACGAATTGGACGTTTCTAGGCAACAACTCGAAGCAGCCAATGAGGCGAGGATCCGCGCAGAGCAGGGACAAGTCAAAGCACAGGAGCAGCTTGAGAGCTTGAGGTGCTTGATGGACCAAGAAATCGCTGCGCTTAAATTTCAGCTGAGTTCCGAAACCATGAAGTATGAATCGGAACTGAAgGGTTTGTCGGACCAAATTCAGGAATACAACAATGTCAAAGAACGATTGTCAGAGCAACAGGAGTTGATTGTGGACCTTGAGACACGATTGAAAGAGCGCAACGATACTCTGCAACACGATAAACATAAATTCACGTCCGAAATAAAACATCTGCGAAACGAGGTGCAACAGTTCAAGAGTGGATACGATGAAAACAAGCTGAAAATTCGCGCGCTGGAAAACGAGCTATTGTTAACAGCGAAACAGCTCGATGAGGAACGGTCGAGGCAGAgagatttgaagaaaaaagTCGAGGAACTGGAGGAAGAAAAAAGTTCGAGAAATAACGATTACGAAGACAAAATAGCTCAGGTTAAAGAGGACATGGAGGAGCTGAAACACAGGCTAGTCACTGTTACAAGAGAAAAAGCAGAATTGTGGAAGAAAGCTGATGAGATGGAATACGAAATCAAAGTGAAAGCCGACGACAGATGGATGGACGACAGCGAAGTATCGCACTGTCTGGGCTGCAACACTGAGTTCTCCTTCTTGTTAAGAAAGCACCACTGCCGAATGTGCGGCCGCATCTTCTGTAACAACTGTTCTGACAATTGGGTGCAAACTCCACACAGCAGGAAACTCCGGCGGGTTTGTCGCCAATGTTTGATCTccgaaaagaaaatgaagtctgAGCTGGTGGGAGGCTACCAGGACATTGACGAGGACTTCAAATCTGATGTCAGTGACCTGTCGCGGAGGACGGACAGCGTGGTGAGTGACATGGAAGGACTGGACCCATCTGACACACCCAATGCCGGTCCCAGTACCTCGCGGACCCATCAAGACTCTCCCCAGTCTTGCTCCACTCCTTCTGGGTCAAAACCTAGCAATACTCAAACTAAAGCGAAGGATCGAAAGAGCAGTGAATCAAGCAATGGGGAACACAAATACACCACTCTGAAATCAGTGAAAAAATCGAAATTGGGACCTGGTAAAGAAAATGAGCAACCTTCTCGCCGTGAAGAAGAACCGGAGAAAGAAGAACGAGAAGATGGAGCGGAATACGAAATTGTAGATGCAGACGGTGAAGGTGATTGCGAACAACCCGGAGCAAAAGTAGTGGTGAATGAATCAGACAGCAGGGAGGATTTGGCTGTACCCTCGCTTAATCAGGAACCGGGGCCATTTTGGCACGTGACCATTCCCCCTGGGAAACGTCATTTGATCCAAGTATTGGTGGCAAGCCCAAGAGTGGCACTTTCTTGGAAATTTAGCACTGAAAAAAAGagCATTCGTTTTGGAGTTGCTTTTAAGCTGACTGAGGCAAAGAAGGATCAGGAATCTGAGACTGTTGTGCCGTTTTCTCAACACAACTCTCACGTACGTGCTGTCAAGGGTGAAATACAAGATGTATCTCCTGGAGTGTACATCCTGGTTTTCGACAACACTTTTTCAAGGTTTGCGTCGAAGCGTTTATTCTGCATGGTACAAgtaacacccaaggattttgGCGAAGGCGACAGTTAA

Transcript

BRAKERYMET00000027978

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BQS8	FYVE and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=FYCO1 PE=1 SV=3
Q8VDC1	FYVE and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Fyco1 PE=1 SV=1
Q6ZNE9	RUN and FYVE domain-containing protein 4 OS=Homo sapiens OX=9606 GN=RUFY4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005033 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF02759 all species →	RUN	RUN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009038 all species →	Domain	GOLD domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036598 all species →	Homologous_superfamily	GOLD domain superfamily	Interproscan
IPR004012 all species →	Domain	RUN domain	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR047337 all species →	Domain	FYCO1, FYVE domain	Interproscan
IPR037213 all species →	Homologous_superfamily	RUN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46753 all species →	FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0005776 all species →	Cellular Component	autophagosome	Interproscan
GO:0072383 all species →	Biological Process	plus-end-directed vesicle transport along microtubule	Interproscan
GO:1901098 all species →	Biological Process	positive regulation of autophagosome maturation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21954	FYCO1; FYVE and coiled-coil domain-containing protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.