Gene detail

Detailed information of BRAKERYMEP00000028006.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029196145.2, polycystic kidney disease 1-related protein [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000028006

ATGTTGTTGCAGAGTTACCACCCAAGTCAGTACCATGTGCATTATACCATTAGAGGTGATGGTGATGGCGAGACATTTTTCATTTACTCCGGGTTTAGAGAAGTCACCCCATTTGTTTTACCAGCTGGACTGCCATCCTTTAACAGAACAGTTCATGTAAATGTGACTGTTGGAGATCGATATAATCCCAGCCGTATGATGCAGCCATTCCAATTACATGTGGAACCTCAGTTAACACCAGAGGGCATCAGCATGGAAGAAATTCTGCTGAATGAAACTGCTGGAAAGAAATTTCTTCAAGAGGCCAGAGATGAACAGGGTTTGCTGCAATTCATTACTGCTCTGTCGATTTCTCTCAATAGGCTTGGTTCAGTTAAAAGCGTGTCATCTATATTTCACCTGAGATTGGAGATAAGAGAGAAACTGCTCCATATCATTAAGAATCTGACTGTTTATGACAAGAATTCAGCCTTGCAAACATGCCTGACTCTGCAATCTCTGACCAAAAAGCCAGATGAGcTTTCTGCCAGTGGCATGGAAATTACATCACAGATACTAAACACGATTGGTGAGGTAATGAGATCCCAACATAACAGGATGCGTAACAGGTGGATTGAAGGCAGAGACCTGCTAAGTCACGAGTTTATACAGAGTGCAATTGTAGTTACATCCAACCTGATTGAAGCTGCTTCCCTTGCTGCGCAGAGTTTTTCCAGAGTTACAGACAAAACCCGAGACACAAGAGAGAACATGCTACTAACAGCAACAGAAGCTACAGAACAACTCATCAAGGCCAAGTTGTCCACGCAGGTTTTTGGAGAACAGCCCATTCAAGTGTCAACACGTAACATAAAGGTTGTTGCAACCCAGAAGAGTTCTGTGTCCAACTCCCTTTTCAGTCTTGGTAATTTTAAGTTTCACATGCCAACCGATCTACAGATGCAGCTGAATCTTACATCTTCAGATAACAAGGGCAGTTGTTATGGCACTGTGATGATTGTTTATCAAGGAAATCCATTCTTCAGTGAAATGCATCACACAAAAGTTGGGAGTTTGAGTATCAGCCACTGCAATGGAGAAGAGATCAAAGTTACAAACTTGAGCAGTGATATTCTCATCTCAATTCCTCGAGATCGTTGGGCTGAGCAGCAACCCGAAAATTTCACCTTAAAATGGAAGCATAAGAATATTCATGTGATCAATCAAACAGAGAAAATGGTGAACCAACCCCTACAAATTTATATGAAGCCACTCTCTGCCCTTCCGCCCGGGTTTGTTGTCAAACTTGTTGCCAGCACTGGCGAAGAGGTTTTTTCGTCAGTCACAAGTTCAGGGGAAGAGGTAGATGTGTTGCTGAATCAGCAACAGCTAATCAATGGGTCAGTTTCTGCTAGTGTGATATTAGAGGACACAGCTTATTATCGCATTAAGTCGGTAAAGACTGGTCCAAGGATTAATTACTTGTTAGGCATTCAGTGGGGAGGATGTTTTTATTGGAACAAGTACAACAGACACTGGGCAAGTGATGGatgcaaaatggaaaaaagaacAGATAAAATGTTATTCTGCAGGTGTAACCATCTGACAGCATTCAGTGGTGCACTTGTACGTCCGCCAAGTTCACTCAGAATCGAAGAACTTGGAAACGTTGAGAAGTTGAAAAACAGCCCTTTGACTGTGGCATTGGTTATCTGTATCTTAGTTTCGTACTTGTTGCTTCTTGGGTTTTGTGTAAAATCGGACAGACATGACAAGAAGAAGCTTGGAGTTGTATACCTTGGTGACAACACCACCTCACCTGCCATGTCTCACAGATTTCAGATAAGTGTGCAGACAGGTCATTGGTTTGGTGCAGGAACATCAGCTGGTGTGTGTCTTATACTTCATGGTGACAATCTTGTCTCTGATCCCATTGAGCTGAAGTGTGCAGGcaaacctctttttcaaaggagCTCTTGTGACGTCTTTGTTTTGGGCCTTCCCAAGAGTTTCTGCAGTAATATCttaaaaattcatgtttggcATGATAACAAAGGAGAACATCCCAGCTGGTTCCTGGAACGAATTACAATCAAGGACGTCGACGCTGGCTCAAAATGGGTTTTTGAGTGCAACAGCTGGCTGGCTGTTGATGAAGAAGATGGACAGGTTGAGTGTGATCTGTATGCAAAGATAAGTTCGGACACCGGCTTAAAGAAGAGCTTTTCTCTGTACTTCGCAAAGAGCTTTGTGGATTATCACCTGTGGCTATCTCTGTTTGGGTGTCCATCCTACAGCAGGTTCACGCGGGCTCAGCGcctgagttgctgtttgtcgCTACTGTTGAGTTTCCTTTGTGTGAACATTGCTTGGTATCAGCCTAAAACAAAGGTTTCTGAAGTGCTGGGAGTATTGGATATATCTGCTGAGAGTATTTTGGTTGGTATCCTGTGTAGCGTGATTGTTCTTCCAGTTAATCTGCTGTGGCTCTTCCTGTTCAGATACAGTCGACGCTCATTTCGCCACCGCTTGAAGGTTTACCCTGTCAGTGAGCACCACACAGAGACCACAGAACTTGTTTCTTCATCAGTCCTTGATCAGTCGCTGGAAACTGTGCTTATTTTGAAGACTATTGGTGATAGAAGGCGATGGTTTCAACCTGTGCAGGATATTGATAGTTTCCCTTCATGCGGTGATTCCCTTCTGGGTCACCCTGGGGATTCTCCTTTGCGTCGACCAAGAGAATTCCGTGAGTCAAGTTCAGATGGAACAAGTCTTGGCTATATTTCAGCACATGACCATTTGAGTTCAGACCCACCTCTTCCCACTGCTAGCGCGGGCTTAGTGGAGACCTGTGACTTCCTTGCAGCCTTGGCACCCACAGAAAAGAAATACTCCGAAGAAATAGACAAGCACAGTGCATACAGTGTATGTGTGTCCACCTCTGCGTCTGAAGGAAGAGGACCTTATCGATCTGCATTCTCTTTGCCGCATGTCTTTGTTTATGTGGCGTGGTCTGGCTGTTTAATGACCGCTTCTGTCGCTAGCTTGTTTACAGTATGGTATGGTGTAAGtttTGGCTTGGACTTGTCCATTCGTTGGCTTCAGTCTTTAACCTTTTCCCTGTTGGAGTCGCTGTTTCTGTCTCAACCAATCATGGTTTTAGCGTTTATATTTTACATGGCGAGCAAATCCCACACAAAAACGGAAAATGAAGAAACAGATGAAGGGTTTGAAGATCTGTCTACTTCTACGCTGCATGAGATTCAGTATGGACACTTAAACCTCGGGTTTGAGGACGAAACTAACGTAGAAGAAGAGTTAGATCCGGCACTGGCCCTTCGTCGAAAGCAGCGACATCTAAAATACCTCAAGCCACCACCGAAGGTTCAGTTAGCTGAGGCGCGAGAAAAGTTTGCGAGAAGCAAAGCCTTGTGGAATTTTGTTGTAGAGCTGTTGGTTTTCGTAGTGTTCTTTGTGGTGACTTCTTTGTTGGTTGTGAGTATGACGAGCCCGGATGTGTATTACCTAAACCAGTCAATCAACAAAACATTCCTCGGGTCTAATTATTCTACGCGAACAGGATATGTCGAGAAATCGTGGGAGAGGATTTCTACTGCGTTGACCAAGAACACTGTTGAGTCTTCTCAAACTCCATTTATGATATTGTTACCTGGTACACAAAGCCTGTTGTTTGGTAAAACAAGGATCACTCAGTTTAAGACTCCAGGCATAATGGTTTGTGGTGAGGTTTCTGCTACCAGTCGTAATCTGCTTGTGGACGTTGAAAGCCCATCCAGTAGTAACGCAAGTACCACCTTTTGTCATGGTGAATGTCACGCAAGTAGAGGCACTTGGATGACCATGGAGCTTAACCAGACAAGGGCTGAATCTTTAAAACAGATGAAAGATATCGCAGATTCTCAATGGATTAATGACTGTACGCGGGAAATATCAGTGGAGTTCGCTATTTACACGCCTTACTTGCGAGCCATCAGTGCTGCTACCCTCTCAGTGAAGGCTTCGTTTATTGGAGCACCAAAGTGCggcttggaattgaacacgttTCCAGCGTTTTTCAGGACTACAGACTATGGTTACTTCGTCAGAGTCTGCAAGatgctgtttgttttattcgTTCTTTACCTTCTCCAACACGAGGTTTTTCTGGCCTTGAAAATGTCTGCTAACTACTTTGCCAACTTTTTGCGAGTGTATCAAATTTTGACAATAACCTTTTCAGGCACATGCATAGTGTTGTATATCCGCTGGTCAGTATGTTTATATGCACTGCTAAGAGAGGTTGAAACGATGAGTCAAACCCAAGTTTTCTACTACGCCAAACAGGTGTCCTGGGCTCAGGGAGCTCTTCAAGCCTCCTACTCACTTCTATTGTTTCTGCTTGTTGTCCGCTGTTTATATCTTCTGAGACCGTTCCGACTTGTTTCCCGTCTCGTTAGAATCTTGGCTTCAGCTGCTGTCCCTCTGCTAGCCTGTGGAGTTGTGGTCGTCATTTTTGTGATTGCTTTCGCTCATTTGGGACATCTCTTGTTTGGCAGCCTTCATTCCTCATTCAAGTCATTTGGAGATGCGCTCTTACTGGTCACGAGTTTCTTTCGCTTGGAGGGTGTTGCTCGATATCAGGGCTCCCTGCTGGAGGAGCGTGCTCTGTTCCTTTCAATCTACTTTGCCTTGTTTTTTATTGGTTTCTGTCTTGTTATGAGAGGCACGATGGCTGCTGTTCTTGTGCACGGAATACCTTATTTCCGAAGGCGAAGAAGCAGTTTGCTTTCAACCATTCTTAAAGAGCTTATTCTCAATAAATTACAGCTACTTAAAGAAAAGGCGTGGAGACGGCAGAGACGAGACTCAATGTCAGACAGTGAGATGTCGGAGGAGAATGAGGAAGACTTCGAAGAAGACGATGATCTCGAGGAGGACGCCTCTTTTCCAATTGAGCACGTGTTGGACGAGCTTGAGGATCAAATTGAAGAAATGACATGGCGCGTGGAGACTTTGTTTGGTTCCGACCCTTCCATTGATGGTATGTCAGATGACCAGCAGTCCTGTTGGTCATTCGAAGGCAGGGAAGAAGACGTGGAATACCTGTATCGAGCAGACCATACGTCCATCTGCAGTTTGAGTGGATACGAGAGCGATAACAGTACCATGTCAGCGGCGAAGTGGGGGCTTTCTACGTCCAGTTCCCATGACATTTCAGACGAAAGCAGCAGACCCGACCAGCTAGCCAGTGCCAGGCCAAGCGAGTTTGCATTAGGTGCGTCGGGTATACATGAGCATGGTAGCTACAACTCTCTGTTAACTGTGTACCCCAGTGGGACTGGCAAGAAAAGCGTATGTTCGTCTCCTTATTTCTTTCAAGACAGTGACTCCCCTATTATCTGCACAGAGTTCGGATACGGAAGTTCGACGTGCTCGTCACCCCAAGGAGAGTTGAATATGCCTGGCGCCTGTGAAAACGCAAACGTCTTGCGTGAAATTGTAATGCGCGACAGTGACTTGCATGAAGGTGTCCTGCGTGACAAGAACATTCCTTACAGAAAGGTCAACGATCACAGTTCAGTTTCGTTGGATGAAGCAGCATCTCAGGGCCTTCCATCTAGTTCTGGGCCCTCTTTTCGCATGCACACTCTTCAGCCCGATAAAGCACCAATCAGACCAAAGGCAATGTACGGTCTGGTCCGTGGGCGTTCGCGGAAGGGCGAAAGAGCATTCCCTGAGTTGGCTACCTTGTCAGCGCGCCCGGTAACAGCCGCAGAAAGGAGCAGTTCAGAAGCAGCAACCTACAGCTCTTCCGACCCAGAAGATGGGAACAGAAGCTTGAAATCTCATTCCCGAAAGGCTAAAAGTCTTTTCCGCAGTGCTGCCGTGTTCCCCTGTCGAGAAGAATCAGGACAGAGTCGTAACCCCCCGCGTCCGTGCTCTGCTTCTAGACCTGCGGAGGCTAGGTCTAGTGATTCAGGTGTGCAATCTGCCTGGAGCAAAGCCCCAGACCCTTACTTCTCAGAACGACCGTTGAAACGACTTCTTGGTGATATCAGTATGAACAGAAGGCTTGGAACCGAGATAATAAACGAACGTGATGACACGCTGCAGCGAACGCGCTCCAGTAAAGATTAG

Transcript

BRAKERYMET00000028006

Protein

BRAKERYMEP00000028006.1

MLLQSYHPSQYHVHYTIRGDGDGETFFIYSGFREVTPFVLPAGLPSFNRTVHVNVTVGDRYNPSRMMQPFQLHVEPQLTPEGISMEEILLNETAGKKFLQEARDEQGLLQFITALSISLNRLGSVKSVSSIFHLRLEIREKLLHIIKNLTVYDKNSALQTCLTLQSLTKKPDELSASGMEITSQILNTIGEVMRSQHNRMRNRWIEGRDLLSHEFIQSAIVVTSNLIEAASLAAQSFSRVTDKTRDTRENMLLTATEATEQLIKAKLSTQVFGEQPIQVSTRNIKVVATQKSSVSNSLFSLGNFKFHMPTDLQMQLNLTSSDNKGSCYGTVMIVYQGNPFFSEMHHTKVGSLSISHCNGEEIKVTNLSSDILISIPRDRWAEQQPENFTLKWKHKNIHVINQTEKMVNQPLQIYMKPLSALPPGFVVKLVASTGEEVFSSVTSSGEEVDVLLNQQQLINGSVSASVILEDTAYYRIKSVKTGPRINYLLGIQWGGCFYWNKYNRHWASDGCKMEKRTDKMLFCRCNHLTAFSGALVRPPSSLRIEELGNVEKLKNSPLTVALVICILVSYLLLLGFCVKSDRHDKKKLGVVYLGDNTTSPAMSHRFQISVQTGHWFGAGTSAGVCLILHGDNLVSDPIELKCAGKPLFQRSSCDVFVLGLPKSFCSNILKIHVWHDNKGEHPSWFLERITIKDVDAGSKWVFECNSWLAVDEEDGQVECDLYAKISSDTGLKKSFSLYFAKSFVDYHLWLSLFGCPSYSRFTRAQRLSCCLSLLLSFLCVNIAWYQPKTKVSEVLGVLDISAESILVGILCSVIVLPVNLLWLFLFRYSRRSFRHRLKVYPVSEHHTETTELVSSSVLDQSLETVLILKTIGDRRRWFQPVQDIDSFPSCGDSLLGHPGDSPLRRPREFRESSSDGTSLGYISAHDHLSSDPPLPTASAGLVETCDFLAALAPTEKKYSEEIDKHSAYSVCVSTSASEGRGPYRSAFSLPHVFVYVAWSGCLMTASVASLFTVWYGVSFGLDLSIRWLQSLTFSLLESLFLSQPIMVLAFIFYMASKSHTKTENEETDEGFEDLSTSTLHEIQYGHLNLGFEDETNVEEELDPALALRRKQRHLKYLKPPPKVQLAEAREKFARSKALWNFVVELLVFVVFFVVTSLLVVSMTSPDVYYLNQSINKTFLGSNYSTRTGYVEKSWERISTALTKNTVESSQTPFMILLPGTQSLLFGKTRITQFKTPGIMVCGEVSATSRNLLVDVESPSSSNASTTFCHGECHASRGTWMTMELNQTRAESLKQMKDIADSQWINDCTREISVEFAIYTPYLRAISAATLSVKASFIGAPKCGLELNTFPAFFRTTDYGYFVRVCKMLFVLFVLYLLQHEVFLALKMSANYFANFLRVYQILTITFSGTCIVLYIRWSVCLYALLREVETMSQTQVFYYAKQVSWAQGALQASYSLLLFLLVVRCLYLLRPFRLVSRLVRILASAAVPLLACGVVVVIFVIAFAHLGHLLFGSLHSSFKSFGDALLLVTSFFRLEGVARYQGSLLEERALFLSIYFALFFIGFCLVMRGTMAAVLVHGIPYFRRRRSSLLSTILKELILNKLQLLKEKAWRRQRRDSMSDSEMSEENEEDFEEDDDLEEDASFPIEHVLDELEDQIEEMTWRVETLFGSDPSIDGMSDDQQSCWSFEGREEDVEYLYRADHTSICSLSGYESDNSTMSAAKWGLSTSSSHDISDESSRPDQLASARPSEFALGASGIHEHGSYNSLLTVYPSGTGKKSVCSSPYFFQDSDSPIICTEFGYGSSTCSSPQGELNMPGACENANVLREIVMRDSDLHEGVLRDKNIPYRKVNDHSSVSLDEAASQGLPSSSGPSFRMHTLQPDKAPIRPKAMYGLVRGRSRKGERAFPELATLSARPVTAAERSSSEAATYSSSDPEDGNRSLKSHSRKAKSLFRSAAVFPCREESGQSRNPPRPCSASRPAEARSSDSGVQSAWSKAPDPYFSERPLKRLLGDISMNRRLGTEIINERDDTLQRTRSSKD

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8UU59	Polycystin-1-related protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
Q2EG98	Polycystin-1-like protein 3 OS=Mus musculus OX=10090 GN=Pkd1l3 PE=1 SV=3
E7FKV8	Polycystin-1-like protein 1 OS=Oryzias latipes OX=8090 GN=pkd1l1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004670 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08016 all species →	PKD_channel	Polycystin cation channel	Family	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR013122 all species →	Domain	Polycystin cation channel, PKD1/PKD2	Interproscan
IPR000434 all species →	Family	Polycystic kidney disease type 1 protein	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46730 all species →	POLYCYSTIN-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04987	PKD1L1; polycystin 1L1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.