Detailed information of BRAKERYMEP00000028048.1 in Astreopora myriophthalma

Genomic Location: BLFK01000812.1:2131011...2154523
NR annotation: XP_029194913.2, uncharacterized protein LOC114960662 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8JZM8Mucin-4 OS=Mus musculus OX=10090 GN=Muc4 PE=2 SV=2
Q99102Mucin-4 OS=Homo sapiens OX=9606 GN=MUC4 PE=1 SV=5
Q63661Mucin-4 OS=Rattus norvegicus OX=10116 GN=Muc4 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000206 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14670
all species →
FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan
PF12662
all species →
cEGFComplement Clr-like EGF-likeDomainInterproscan
PF01390
all species →
SEASEA domainFamilyInterproscan
PF00094
all species →
VWDvon Willebrand factor type D domainDomainInterproscan
PF06119
all species →
NIDONidogen-likeFamilyInterproscan
PF05345
all species →
He_PIGPutative Ig domainDomainInterproscan
PF07645
all species →
EGF_CACalcium-binding EGF domainDomainInterproscan
PF12661
all species →
hEGFHuman growth factor-like EGFDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000152
all species →
PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan
IPR009030
all species →
Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR001881
all species →
DomainEGF-like calcium-binding domainInterproscan
IPR036364
all species →
Homologous_superfamilySEA domain superfamilyInterproscan
IPR001846
all species →
Domainvon Willebrand factor, type D domainInterproscan
IPR015919
all species →
Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR018097
all species →
Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR026823
all species →
DomainComplement Clr-like EGF domainInterproscan
IPR003886
all species →
DomainNIDO domainInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR000082
all species →
DomainSEA domainInterproscan
IPR005533
all species →
DomainAMOP domainInterproscan
IPR050751
all species →
FamilyExtracellular matrix structural proteinInterproscan
IPR049883
all species →
DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR013032
all species →
Conserved_siteEGF-like, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24034
all species →
EGF-LIKE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0007160
all species →
Biological Processcell-matrix adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERYMEP00000028048.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP