Detailed information of BRAKERYMEP00000028084.1 in Astreopora myriophthalma

Genomic Location: BLFK01000812.1:1108361...1112914
NR annotation: XP_015771921.1, PREDICTED: uncharacterized protein LOC107350213 [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P46197Atrial natriuretic peptide receptor 2 OS=Bos taurus OX=9913 GN=NPR2 PE=2 SV=1
P20594Atrial natriuretic peptide receptor 2 OS=Homo sapiens OX=9606 GN=NPR2 PE=1 SV=1
Q6VVW5Atrial natriuretic peptide receptor 2 OS=Mus musculus OX=10090 GN=Npr2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002243 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08376
all species →
NITNitrate and nitrite sensingFamilyInterproscan
PF07701
all species →
HNOBAHeme NO binding associatedDomainInterproscan
PF00211
all species →
Guanylate_cycAdenylate and Guanylate cyclase catalytic domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050401
all species →
FamilyCyclic nucleotide synthaseInterproscan
IPR001054
all species →
DomainAdenylyl cyclase class-3/4/guanylyl cyclaseInterproscan
IPR013587
all species →
DomainNitrate/nitrite sensing proteinInterproscan
IPR029787
all species →
Homologous_superfamilyNucleotide cyclaseInterproscan
IPR011645
all species →
DomainHaem NO binding associatedInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11920
all species →
GUANYLYL CYCLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001653
all species →
Molecular Functionpeptide receptor activityInterproscan
GO:0004016
all species →
Molecular Functionadenylate cyclase activityInterproscan
GO:0004383
all species →
Molecular Functionguanylate cyclase activityInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0006182
all species →
Biological ProcesscGMP biosynthetic processInterproscan
GO:0007168
all species →
Biological Processreceptor guanylyl cyclase signaling pathwayInterproscan
GO:0009190
all species →
Biological Processcyclic nucleotide biosynthetic processInterproscan
GO:0035556
all species →
Biological Processintracellular signal transductionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERYMEP00000028084.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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