Gene detail

Detailed information of BRAKERYMEP00000028122.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029196025.2, unconventional myosin-Ib-like isoform X4 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000028122

ATGACAGAAGCAGAGGGACAGGCTACAGGGCCTGGTGGCCGCAGCATGCTGGACAACATGGTTGGAGTGGGTGACATGGTTCTTCTTGAGCACCTGACTGAAGATTCTGTGTTAGAGAATCTGTGGGATAGATACAACAACAAAGATATATATACCTACATTGGAAATGTGGTGGTATCCATTAATCCTTACCGAAAATTCAAGCTGTATTCTTCTGAGATGATAGCTGAGTACAGATCCAGAAACATCTATGAATTACCTCCACACATATATGCAATAGCTGATGTTGCATACAGATCCTTGAGAGATTACAACCAAGATCAGTGTATTCTAATCACTGGTGAGAGTGGATCAGGAAAAACAGAGGCATCAAAGGTTGTCATGCAGTATGTGGCAGCTGTTTCTGGAAAAGGCTGGGAAGTCGACCGAGTTAAGGAACAGTTGCTTCAATCTAATCCTGTGCTGGAAGCTTTTGGCAATGCAAAGACTCTCAGAAATGACAACTCTTCACGCTTTgGCAAATACATGGATATTGAGTTTGACTTCAAGGGCGACCCTGTTGGAGGAGTCATTACTAAATccttttttttaaaatttcagtcaCGTGTGGTGCACCAAGTTCAAGGGGAAAGAAACTTCCACATTTTTTATCACGTTCTGTCTGGTGCATCAGAGGAACTTCTTCGCAAACTTCATCTGAAAAGAGACTGTGATATCTACAACTACCTCAATCAGAGTGGATGTTCAAAAGTTGACACAATCGATGACAAGAAGGACTTCCTCGTGGTAGAGAAAGCAATGGATATTGTGGGTTTCACTCcagatgaaaaaaattatgtttactCACTTCTGTCTGCCATTTTAAACTTGGGTAATGTGACGTTTGGTGAAGAAGATGACCATGCTGCAGCACATGATTTTGTAACTCTCACAAATAGAACATttttagATTGGACTTGTGAGATGCTGCAGTGTGGATCTCATTTGCTACAGGATGCTTTAACAAAGAGAACCGTGGAAGCTGGAAATGAGAGAGTGGTGACCCCTCTTTCAACAGCTCGGGCTTATTATGCAAGAGATGCTCTTTCAAAAGCCACTTATCGCAGGATGTTCTCATGGCTTATTCAGAGAATCAATGATAGCATTAAGGTGAAAAAGAGGGGTAAAAGGAAAGTGATTGGAGTCCTAGACATTTATGGATTTGAAATATTTAAGAACAACAGCTTTGAACAGTTTATCATCAATTACTGTAATGAGAAGCTGCAGCAGATTTTTATTGAGCTGACCCTTCAGTCTGAACAGGAGGAGTATGTCAGAGAGGGAATTGAATGGACAACAATTGACTATTTCAACAATGCTATAATCTGTGATCTGGTTGAGAAGACTCACGTTGGTATCATAGCGCTTCTGGACGAGGAATGTTTACGACCAGGAGAAGTCAGTGATCAGACATTCCTGGTAAAACTGAATAAACATTGCACGGAACATCCGCACTTTGAGAGCAGAAGGTGCAAAAAGTTCCTTTCTGACATGTCCCTTCCGCACGATTGCTTCAGGCTAAGGCATTATGCAGGAAGTGTAACATACTGTGTAAATGGATTTGTGGACAAGAACAATGACCTGCTATACAGAGACCTCTCTCAGTGCATGTACTTATGCGGGCATCCGCTGGCCAAGGAGCTTTTCCCTGATGGTTGTCCCACCAAAGCGACAAAGAGGAGACCTCCGACAACAGGAGCGCAATTCAAGATTTCAGTCTCCGAGCTGATGAAGAATCTTAAGTCTAAGAACCCTCACTACATCCGTTGCATAAAGCCTAATGACAGAAAAGTAGCGGGGCTTTTTGATGACAAACTGGTTAGACATCAGGTTCGATATCTTGGGTTGCTGGAAAATGTTCGCGTAAGGAGAGCAGGATTTGCATTCAGACAAGAATATGATCAAGCACTTCAGAGATATAAGATGCTGTGTGATAAAACCTGGCCTAATTGGGTGGGTATGCCAAAAGAAGGAATCAAAGAACTCTTCAAGAGTCTTAATATCAAGCCGGCAGCCTGCGCATACGGAAGAACTAAGATCTTCATACAAAACCCACGAACGTTGTTTGATCTAGAAGGGAGACGAAAACAGGCGATGCACCGTTTGGCAGTTATCATTCAGAAGGTTTTTAGAGGCTGGAGACAACGAACAAAGTATCTAAAGATGAGAGAAAGCGAAATTATCATCGCCAAGTACTACCGTCGATTCAGGGATCAACGACTTTACCAAAGGAAGAGGAAGGCTGCTATTGTGATCGCGTCTTATACCCGTGGCTGGAAGGCGCGGAAGCTTTACAAAGCCATGCTTTACGAGAAGAAGTGCATTTGGGCCGTTGGTATAATACGAAAGTATTTTTACGGATGGCAGGCGCGGAAGCTTTACAAAGCCATGCTTTACGAGAAGAAGTGCATTTGGGCCGTTGGTATAATACGAAAGTATTTTTACGGATGGCAGGCTCGCAAGCTTTATCGTGCCATGGTTCTTGATAAGAAGCGCAATCTCGCTGCTGGCGTAATTGCTGCTTACTTTAAAGGCTGGAAGgcTCGCCAGCTTTATCGTGCCATGCTGCTTGAAAAGAAACGCAATCTTGCTGCTAGCATTATTGCGGCCTACTTTAAAGGCTGGAAGGAACCCGAGGAACAGAAATGGTTTAAACCGGACAAGGCGATGGCTTGCCTCGGAGCGTTTTTGTCTCCGGCAGCAAGAACGATCTATAAACACAGTTTGGGGTTGAGCGAGGCGGGCTGGGCGGAGGAAATGTCATCTAGTCATTGTTGTAATAAGGAAATTCTATGGCGCGGGTATCAGAGTCTCGGGATACGACATAATTTTCTTCGGTTGCTTCAAGAGGAAAACGAGCCGTATGCTTCGTGGGAATCCCGGATCCGTAACCAGGGTGTGCAGTGCGACTGCGAAGGGTTCACAGACGAAATCACGAGAGATCAATTTATCGCTGGCTTGACAGCTGAACTCCGCTTCGTGTCGAATTGA

Transcript

BRAKERYMET00000028122

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43795	Unconventional myosin-Ib OS=Homo sapiens OX=9606 GN=MYO1B PE=1 SV=3
P46735	Unconventional myosin-Ib OS=Mus musculus OX=10090 GN=Myo1b PE=1 SV=3
Q05096	Unconventional myosin-Ib OS=Rattus norvegicus OX=10116 GN=Myo1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000485 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036072 all species →	Domain	Class I myosin, motor domain	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13140 all species →	MYOSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005902 all species →	Cellular Component	microvillus	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030050 all species →	Biological Process	vesicle transport along actin filament	Interproscan
GO:0031982 all species →	Cellular Component	vesicle	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000028122.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.