Gene detail

Detailed information of BRAKERYMEP00000029059.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029208193.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114971803 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000029059

ATGGGAGCCCCTAAACAACTCGCAAAGTACATCTACTGGTTCACTGCGCTGATCTTCATTCAAGAGAAAACTGGAAATATATTTGGAGCCGCAATTTGCAGCCCTCCGTGCCTTCTATTTTCCAACACAACGAACATCATCGCTCTTGACTACAAAACGTCTACAGCGCACTCTGTAGTGTCTGGTTTAACAGGAGCTGTTGCGATTGATGTGCATTATAGCTTGGGGTACATATTTTGGAGCGACGTGTTGGAAGGCAACATTAAGCGTTCCGGTATTGACGGATCAGGCAAGACAATTATTATAAGCAGTATAGGGATTTGTGACGGATTAGCGGTGGAATGGAGGACATCACAGTTGTATTGGACTGATACTACTTCTGATACCATATCGGTATCGGACCTATCGGGCAACAACCAACGTACTCTACTCTCCTCGGGACTTGAAGAACCGAGAGATATTGCGCTGGATCCAGACAGGGGGTTAATGATTTGGACTGACTGGGGAAGTACTCCAAAAATTGAGAAAGCGACTTTGAATGGGGATCAAAGACTTACCATAGTAACGTCGTATCTGCAACTGCCAAATTGCATTGAGCTTGACACAGGCAACGAGCGAGTTTACTGGGTGGATGCAGCCTATGATAGAATAGAGTCTGTGAGTTACCAAGGCAACGGCAGGATTTTTCATTcaagtgtcagcggttttcatGCATTTGGATTGGCCATGATAGCTCCATTCTTGTTTCTTACTGACTGGAATTCAAATGATACTATTCACATGGTGGACGCTGGCAGTGGGCATTACGTAATCAGCAATTTCCTCACGAGTGGCACTTTAATGGGAATTGTTGCGTACGATAGCTCGAGGCAACCTCCAGCTTCAAATCAGTGTTCTGTAAACAATGGAGGATGCAGCCACTTTTGTGTGGTCACGTCATCTGGTCACGTGTGCGTCTGTCCAGCTGGTTTTGCACTGAAGCATGATGGGAGGACTTGTGAAGATAAATTGACGAAGTTCCTTCTGTTCACTGACGCCGATGAGAAGTCCATGAATATCATTTCGCTGGACGTCAACGATTTGTTCGCTACAAGACTGTTTTACCATATTTACAATGCACGCCCTATTGCAGTAGACTTTGACCCTCTCGATGGTCGCGTGTACTGGACTGAAGTGGAACACGGTCTGTTATTCAGCGCTTTTCCGAACGCAACTTCGGTTAAAACATTGTTCTGGTGTAACGTCAAGGCGCCAGAAGGCTTAGCTATTGACAAGGTGGGTCGAAACATCTACTGGTCAGACACAGGAACCAATCGGATTGAAGTAGCGGGACTTGATGGAACGAAAAGGAAACTGCTGATCAAAGATGGACTTGATAAACCGAGAGCAATTGTTCTCGATGAGAGAAATGGCATCATGTATTGGACAGACTGGGGAGCAAGTCCAAAGATCGAACAGGCAGCCATGGACGGCTCATCAAGGAGAAGCATCGTAACAGGGAGCCTTGGCTGGCCAAATGCACTCACTATTGATCGCACCAATAACCTCTTATACTGGGCTGATGCTAAACTGGACAAAATAGAAGTCTCTGACCTTAATGGTGGTAACAGACAAGTTATATTGTCATCTGCTGCCGATATACATCCGTTTGGTCTGACATTGTACCAGGGAATGCTTTATTGGACTGACTGGGCTACCACAAGTATTTCAAGGCTCCATTTAAGCAATGGAACCAGGGAATTGATAATAACAGGACTTAAGGAACCAATGGATATCCACTTGTATGATTCGTCGGTGACTATTCCAGGCTCTCACCCATGTGCTTCAAACAACGGACTTTGCAGTGACCTGTGTCTACTAAAGCCGCACGGAGGATATCAGTGCGCATGCCCAACGGGTATGGCTCTCAAGCCTGATGGGAAAACCTGTGACTACGACACTTTCTATAACAAAAGCTCGGAACAATTTATGCTTTTTGCCGAAGCGGATAGTGGGAAAATTTTCAAGGTCCACTTGGCCGTACCAGACGCTCCCTGCGAACCATTGGCCATACTAAGCAACATCTCCTTACCTGTTGCTGTTGATTACGATCCAGTTGATGGCATGGTTTACTGGACTGATGTTGGGCTGAGTCAAGTTGCCAGAGCTTATCCAAATGGCTCTGACCTTCAAGTCATAGCTAGTAATGTGGTAAATTCCTATGGAATAGCGGTTGATTGGGTTGGCAGAAACCTGTACTGGACAGATGCCGATACAAATAAGATTGAGGTCTCGCGATTAGACGGGTCTTTTAGAACCAGCTTCGCAACAGCCAACGTGGACACGCCGAGGGATGTAATTCTTGACATCGAAACAAGGACAATGTATTGGAGCGACTTGGGATCCTCGACAAAGATTGAGAAAGCGAATATGGATGGTACAGCCAGAACAACGCTAGTGAGTTCAGGACTGGCCGGGGTAAACTCACTTGccttggattttaaaaaaaagctgTTGTATTGGTGCGACGCACAACTCGATAAAATCGAAAGAGTTGACTTCCTTGGTAATAACCGCGCAGTGGTGTTGAATCTGTCATCTGTTAATGAAGCAGATCATCATCCCTTTGGGTTGGCGCTGTATGAGGATGTACTGTTCTGGTCAGATTGGGCTACCAGAAGTGTGCATAAGTTCAACATGACGTCTTCTATCAGTTTGGAAGTAGTTCAAGGGATGGGTCTGCCATTGAAAATTCACATTCATGATAACAGGAACATAGTATCCGGCCCAACCAGCTGCTCACATTTTAATGGAGGGTGCAGTCACCTTTGCCTGCCAAACCCAACTGGTCATCGGTGTTTATGTCCAGAAGGAGTACAACTAAAACCTGGTGATCCATTTATCTGCCAAGGAGTTATCACCTGCCCACCATTAGTCACCCCACCCAGAGCAGCTTTGTTCTCTGCCACCTGTAACAACAGCTATGGATCAAACTGTTCGTTTTCCTGTCAAACGGGATACACCAGCCCAACTGGAAATGTGACGAGAACATGTTTGTCGTCTGGACAATGGAGCGGAAACGACATCAACTGCACCGATTCTCAGCCGCCAACATTTGGTCTGTCATGTCCTGGCAGtccgttcattgcgcatgctgAACGAGACAAGTTTACAGCTTTGGTCAACTGGACAGAACCTGTTGCTACTGACAACTCAGGAGTCGCACCCTCACTGACATCAAACTACCAACCGCCGCACAGATTCAATCAAGGAACTCACATGATCACATACACGGCCGTGGACCAATCAGGAAACCAAGCCAATTGTACATTCAAAGTAAATGTGTTAGGTGCGTTGGCAGATCTTTGcgaaattgtttcattttattaa

Transcript

BRAKERYMET00000029059

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
Q91VN0	Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000594 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02494 all species →	HYR	HYR domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for BRAKERYMEP00000029059.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000029059.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.