Gene detail

Detailed information of BRAKERYMEP00000030070.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029202273.1, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000030070

ATGAGATTGCCATTATCAGGAGGGACAGTGACCTGCAAGAATTTCAAAGCAAAGAAGCAGAGAGTGCTTGATGATGTTCTTCAGAATGTGGAACAGATTGCAGGGAGAGGGGAGGGCCACATTGACTTTGAAGGATTCCGCAAAATTTATGATGCAGTAATGACTGTTAAAGAGTTAGTATTGATATTTTCTGATTACATAGAAAATGGAACCTATGTTCCTTTGCTCAACTTTCAGAGGTTCCTTTTAGAAGAACAAGAGGAACCTGGAGCAAAAGACCTTGAAACTGTACGGAGCTACATGTTGGAATACCTGTCAGATGGAAGTAGAAGTTATTCTGAACCCTATTTCACAGTTTCAGAGTTTTTAGATTACCTGATGTCAAAAGGAAACAGTGCATTTAATTCATCACATTGTGAAGTTTATCAAGACATGACGAAACCTCTAACACACTACTGGATTGCTTCCTCACACAACACGTATCTGACTGGTGATCAGTTCCAAGGTGAAGCCTCTGTGGAGGCTTACATTCGTGCACTCAGAATGGGCTGTCGCTGTCTAGAGTTGGACTGCTGGGATGGCCCAGATGGCCAACCCATCATCACACATGGACATACACTTGTGTCCAGAATCAAATTCATGGAAGTAGTACGTGCTATCAAGGACAATGCATTTGTTGCATCAGACTATCCGTTAATTCTGTCACTGGAGAACCACTGCAGCATTCCTCAACAGAAGGTCATGGCACAGACTTTCAGGGACGTCTTTGAAGACTGTCTTCTCACACAACCAGTTGATTCTAATGCAAAAGAGATGCCATCACCCACTGCTTTAAGGAACAAAATCATACTCAAGCATAAAAAGCTTCCCAAAGACTCCACTCAGCTGGCAGACCTCCCAGTCGGTGACTCATTAATAGAGGATGACTTAAGTCAATCACTGAAGAATGGATATTTACTGCTTGAAGATGAAATTGAtcatGGTTGGAATCGTCACTTTTTCTGTTTAACAAAAGACAAGTTGTTCTGGACAGAAGAACAGACCAGGtctgaagatgatgatgatgacgagggACTTGAAGGAGGTGGACTTGGAGAGtCTTGTAAAGATGAGCTTCATTTTGGTGAGAGATGGTTCCATGGCAAGCTTTTAGATGGGCGAAGAGTATCAGATAGGCTATTAAACCAGTTTAATAGGGGAGATGGCTCGTTCCTCGTGCGAGAAAGCACCACATTTGTGGGAGACTTCTCATTGTCCTTTTGGCGGAAGGGAAAAGTACAACACTGTCGGATAAGATCCAAACAAGAGAATGGCCAGACAAAGTATTACCTGGTTGATCAAGTAACATTTGACAGTCTGTACAGCCTCATCAACTTCTATCAGAGTCACCCTCTAAAAAGCATGAACTTTGAGCTCACCCTGACAGATGCGATTCCTCAGCCAAATGCTCATCTTGACCAATGttggTACCATGATAATCTTAATAGAGATAAGGCAGAGGACATGTTAAAGAGAGTGCGAAAAAATGGTGCATACCTTGTGAGAAGGAAAGATGGAGAGCAAGCAGCAGAGATCTCAGAATTTGAAAATCAGCCAGATACACAGGATGAGAAGTCATCATACGCCATCTCCTTCAGAGCGGAAGGCAAGATAAAGCACTGTAGGATAAAGCGTGAAGGTCGCCTATTCACAATTGGCACAGCACAGTTTGAAAGTTTGGTGGAATTGGTTGAGTTCTACATGAAACATCCTTTGTACAAAGGAATGAAACTCAAATATCCAATCAATGAGATTGTGTTGTCTAAAGTCGGTCAATCTCCTGAAGAGGATGCTATCTATGGCAGTGGAGACCATTATCATGAACCAAATCAGTTCATGACAAAGCCTGCATGTAGAGCCTTGTGGGACTATGAAGCTCAAAATCCAGATGAGATGTCATTCTGTCGTGGTGCATTTATCACAAATGTGACCAAAGAGGATGGCGGATGGTGGCTTGGTGATTATGGAGGCcagaaacaaaaattctttcCAGCCAATTACTGCGAGGAGATAAACTATGTTGCAGAAGAAGAGGCCAAGAACAACAATTTCATGAATGGCGTTGATCACGAAGAGTCAGAAACTCAAGAAGTGTCTCCATTGGGTGATCTACAAAAAGGAAGTATTGATCTACAAGGATGCATAGTTGAAACAGGACCTCCCAAAGCAGGGCAGAGGTACATGTTCAGGATAGCCAGACGTGATGTTTTACTCGAAGCCGCTGCAGAGACACAGGAGGATTTAAATGAATGGCTACAAGTTTTGCGACAAATGGCAAATGAAAGAGAAGCAGTGGTGCAAAAAATGGTACGGCAGGCTAATCTCAGCCAGGAGCTGTCTGATTTAGTTGTATACTGTCAGCCAGTACCTTTTAATATTGAAAATGTGTCTGGTAAGCACTATGAGATGTCTTCCATCCCAGAAACAAGACTGGAGAGATTAATTAACAAGAAATATAGCAAAGAATTTATGAAATATCCTTTTTGTTGTGGGTGGTGCACTTATGGTGCAATACCCATCATGTCATTAGTTACAATGTGGAACCATGGCGTGCAACTGTGTGCACTGAATTACCAAACACCAGATAGGGCAATGCAGCTCAACCATGGAAAATTTCTCGACAATGGAAGGTGTGGCTATGTTTTACAGCCTGAGTGCATCCGACATGATTCATTTGAACTTCACAGTAGGGATGCTTCTGCATTGGCTGCGGTAGAGCCTCTGACTCTCACTCTAACAATTATTGCTGCAAGGCATTTGAATAAATCAGGCCGTGGTATAGCTTCTCCATTTGTTGAAGTTGAGATTGTTGGAGCACCGTATGACAACACCAAGTTCAAGACAGAAACAAAGTCTGATAATGGTTTGAACCCTGTGTGGTGGGTCAAGTTTGATGTGGATGTCATCAACCCACCATTGGCTTATCTTCGCTTTGTTGTCAATGATGAGGACATGTTCGGTGAACCTAACTTCATCGGCCATGCTATCTTCCCCATGTGCAGTTTGAAAACTGGTTACCGATCAGTACCTTTAAAGAATGCTCACAGTGATGAGTTTGAGCTGAGTTGTTTGCTGGTTCACATTGACATCAGAAGTGCCATGGGCACTGATGAAAACCTGTATGCATCTATCCAAGTACTGCGAGACCGTGTGGAAGCAATCTCCCATGACATGGAAAACAAGGAGATGAGAGCACGCATGACCATGTCCAATTTACTGAGCCAACAGAGTGGACCACTGTCACAGGAAGTGTCACAGTTTCAAGATGCTCACGAgcatcaaatggaaaaccttggCAGGCAGCTTAGACAACAACAAGATAATTTACGCCGACTGCAGAAGGAAAGAGCTGCCAAGTAG

Transcript

BRAKERYMET00000030070

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10686	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Rattus norvegicus OX=10116 GN=Plcg1 PE=1 SV=1
P08487	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Bos taurus OX=9913 GN=PLCG1 PE=1 SV=1
P19174	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Homo sapiens OX=9606 GN=PLCG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002630 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00387 all species →	PI-PLC-Y	Phosphatidylinositol-specific phospholipase C, Y domain	Family	Interproscan
PF00388 all species →	PI-PLC-X	Phosphatidylinositol-specific phospholipase C, X domain	Family	Interproscan
PF09279 all species →	EF-hand_like	Phosphoinositide-specific phospholipase C, efhand-like	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017946 all species →	Homologous_superfamily	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR001711 all species →	Domain	Phospholipase C, phosphatidylinositol-specific, Y domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000909 all species →	Domain	Phosphatidylinositol-specific phospholipase C, X domain	Interproscan
IPR035023 all species →	Domain	PLC-gamma, C-terminal SH2 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR015359 all species →	Domain	Phosphoinositide-specific phospholipase C, EF-hand-like domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR035024 all species →	Domain	PLC-gamma, N-terminal SH2 domain	Interproscan
IPR001192 all species →	Family	Phosphoinositide phospholipase C family	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10336 all species →	PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0008081 all species →	Molecular Function	phosphoric diester hydrolase activity	Interproscan
GO:0004435 all species →	Molecular Function	phosphatidylinositol phospholipase C activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0010634 all species →	Biological Process	positive regulation of epithelial cell migration	Interproscan
GO:0048015 all species →	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0051209 all species →	Biological Process	release of sequestered calcium ion into cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01116	PLCG1; phosphatidylinositol phospholipase C, gamma-1	EC:3.1.4.11	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.