Gene detail

Detailed information of BRAKERYMEP00000030450.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029201598.2, uncharacterized protein LOC114966039 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000030450

ATGAAACGCAGCCTATTTGAGGAGATTTACAAAGCCGTACTTTTGGCGAACAAAGATGACTTGCCACTTGTGGCTGATTGCCTGACATGTGTAGGCATTAAGCTGATATATTCGTGTGAGTGCCACCAAACTTGTGGCGCTTTTTCGAAGGGTGCCTATCAAGTGCTGAGAAAGGCGCTGGAGATATACGACAAGCTGCCCAGTAAAGAAGGGGATCTGGTAGCGCAGTGTTACAGCAAGATCGCTCGTTGCATGGCTAAGAATGGTAACCAAGTTAGAGCAGCAGAGCTGAgtgaaaaagctgtggaaataaGACAAAAGATGAGGGACCAGGAACCGTTCAAATACGCAGCATGCTGCCACGATAGAGCAGCTGTTCTCACCTCCTTAGGTGATCATCGTGGAGCTTTACACCTCAGAGAAAGTGCTCTTAGCATTTATGTCGACCTACTTGGCCAACACCCCTTTACCGGCACACTCTACAATTACCTTGGCAATGACTGCCTCGCAATAGATGAGTTCGACACTGCAGTGGATTATTTTTCTCGAGCACTTAGTATCAGGAAAGACTGTGTTAACCAAGAAACTGCTCGAACTCTGCACAATTTGGGCGTAGCGTACAAAAAGAAGGGAGAATTTCAGAAAGCCATGGAGCACCTAAATTCAGCTGTGGAAATCCAAGAGGCTTTGTTTGACGTCCCGCACGAGAAGCTCAATTCCCTTGAAGAGCAAATGGATATCTGTGCTCACCTTGTCGGCCAGGAAGCCAAAATTGAAGAGCTTCAAACGAAAATCCAGCAATACGAGAATGCAATGACCCAAGCGAAGCAGTCTAACAACGTGAGATTGGAACTAATAATGGACATTGTAGACCAAAACCCTGTTCCTTGGCAGCCTGGCTCTAACAATCCCTTCTGTGGAATTCATGTTTGGCCGGAGCCAGACCCAGTCACTTTCAAAACAACTCTGCACAAGAATCCAGAGAGAGAGGGCACATATGTAGACTGTCCTTGGGAAATAATCATCAAAAATGAGACCAAAAAAGGGCAAAGGAAAGTTATCGCACGTGGGTCTTTCGACTTGGACGATTATATCAGTGAAGAACAAAAGGACTCTGAACTTACTGTCACCCTTAACTCTACAAATAAGGACATAATTGAGACAGGCTCCATTGAATTCCAGTTAACAACTGTTATGCTAGAGGGTGGAGTTCCCTATTGCaacaaagaagaagaactaAAAGAATACTTGGCAGATGCTATTAAATCAACCTCTGCTTTGAAAAAAGctaagaaaggaaacaaaaatggcTGTGGAAGTGGCTTCTCTGGAAGTAGTATGACTGGTTCTAATCATGAACAATCAAAGCCACAGGAAAATAGCTTGCATACAATGGCACCCAGCAAGCCTGCTAGTGCTAGCCACATTGGTGTTTCCACTAATGATGGAGGGCTGAATAAGACCCTTGGCAAAAAAGCTAATGATGCTGATGCAGGTGACTCTATTGCATGGGGGAAGACAGGGTTTTCTGAGACACAATCCTATGCAAAGGAGCACAGTGTTCAGACCTTTGCAACCATCAAGCCTGCTTCATCGCCCAGAAATAATGGAGGGCCAAGAAAGCCATGGAGGAAGCCACCTCCAATACCACCAAGACCATCAAGGCTGCCTCAAGTTCTACGGAGAAACCCTGCACCAGTGCCTCATGCAGAAGAGGGAAAGAGTAATTCTATCCAGGCGAAGACAGAGGCAGTGCAGAGAAGTAAGGAACAACAACCCCCCAACAGTGGTAACACCTCCAAGTCACTGAACcgaaaacagaagaagaaacACAAGACAAAGGACCTGAAAGAACTTAACTCAAATGAGGAACGAAAAACTTCTTTTGAAGGATTGTCACACTGTGAAGAAACTCCTGTGACAAGTGCAACTGGCACTGAGGGCAAAGAAACTCCTTCGCCACTGAATCGTTTTGGATGGAggggaagaagaaagaagaagaaccCTAAAGAGCTAAATTCATTCAGTGGGAGTTCGAAGGAGGAAtgtggaaaaaaattcatgaaaGATGCTATGGGGACTGcgggaaaaggaaaaactacAAGTGGTAAAGTGAAACAGAGGATTGAGTATCCGAAGAAGTTAAACCCATTTTGCTGCAGCTCTGATTCTTCACAACGTGGCAAAGTTTCAACACCCATGAAAACATCTCCAGAAAATGCAACTAGTGCTATTAAAAGAGAGGACAAGAAGGGTGGTGCTTCTTGCAGTAGTGCTCCTTCTCCAGCACCACAGCATACATGTAGAAGGATTGGAAGAAAATCCAGTGAGCAAGAGCCAGAGACAATGCCTTTGCAAAAGCCTGAAAAGGAGGAAAATTTTACACTTGGTCATCCAGAAAACTGGGATAGTACACAAACCTCTATGTACAAAGACAATATCCTCAATGACACTGCTGAGCTGAAGAAAGCAAACTCTTCAGATGTGGAGCAGACTGACAACAAAGCTATGGCTGCTAAGATATCTCAAACAAAACCTGAAGAGGCTGCCCAGGTTGTTGTAGTTGGTGCTGTTGATGTCACTGGCCAGGACCCCTCTGAAGTTCTGActgaacaagaagaacaagctTTGAGGGATGAGTGTTGTGATGTAGTTGAATCAGTTGCCACTGCTGGTGAAGGGCCTTTACTATCAGACGTCTCTTGTGCTGAATTCCAGCACACTGGGGAACAGTCGTGTGAAATAACAGATGGAGAAGCTGTGCAATGTGATGCAGTTGAAACTGTTACCCATGTCAGTAATAGCTTTTCTAGAGGTGATAAACTTCCTTTAACTTCTGAGGCAACACCTACTGCTTACAAGGACAATGTTCCAGAGAGTGAAGTTGACAATGGCTCCCAAGAGTCTGAAGATGCTGCTACTGTCCATGCTGATGTCTCTGTAGATGAGGACAAGGGATCATATTCAAAGGGTAAGAATGACACAGAATCTCCTTGGGAATTATGCATTAACCGTAAATCTTGTCAAACAGAGGGTCAAGTTGACACTAATTGCCAAAAGCCTTCTGTCCATGGTGATGTCTTGGTTGGTGATAAAAAAGCAAGGTCACCAGCCCTGTCTCAGAATAACACTGAGTGTGTGGAAGGATTACCAGAGTCCTGTCAAGAGAACACTCATGATGTGATTGGTTCTGGTTCTTCTCGCCTTCCTGGGCTAAGAGCTGACCATTGCAATGTTGCTGCTATAGGGACCTCAGTGGTCACTGACCAATTTGAACTTGAGGAATGTCATTCAGCTTCTGTCAACAAAGTTAAACAGAAAAGTTCCTGCTTTTATCAGAAGGTTTTCAGTCCTTTACAGCAAAAGGTGATGCAAAGCCGTTTGGAGCTTTCTGCGTATATTGCAGAGGAGATGTATTTCTTGGATCAAGAAATTCATTCCTTGTGTAATGTTATTTTCAACTTGGAGAAAGAGTTGAAGGATGCAATGACATTTGAAGAACGTCAGGAGGAATTCAATGGTCTGAAGCAAGACTGGCTCAGCTTGATTGACTACCAGGCTCAGCTTAACACAAGGAAACAAAACCTTGAAAACCTTCAGTTGTCTGAAAATCTTGAACAGTGTGTTGACATTTTGAGAACTGAGCTGAAATTACTGTTCGATATGGAGGATTGGCGTAAATCTGACCGTCAGAGAACCCAAGAGGCCAGTCTTGTTGGCCTTGTGCTCTTCTTTGAAACCAAGAGGCGTGAGAACTGTTGA

Transcript

BRAKERYMET00000030450

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003007 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12130 all species →	bMERB_dom	Bivalent Mical/EHBP Rab binding domain	Domain	Interproscan
PF10358 all species →	NT-C2	N-terminal C2 in EEIG1 and EHBP1 proteins	Domain	Interproscan
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022735 all species →	Domain	bMERB domain	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051787 all species →	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR019448 all species →	Domain	NT-type C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19529	SYCP2; synaptonemal complex protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.