Detailed information of BRAKERYMEP00000030467.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015753746.1, PREDICTED: uncharacterized protein LOC107333443 isoform X1 [Acropora digitifera]
Species abbreviation AMYRI · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9LQV2RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q0DXS3Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2
Q8LHH9Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000941 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF05183
all species →
RdRPRNA dependent RNA polymeraseFamilyInterproscan
PF00270
all species →
DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR007855
all species →
FamilyRNA-dependent RNA polymerase, eukaryotic-typeInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR043519
all species →
Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR011545
all species →
DomainDEAD/DEAH box helicase domainInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23079
all species →
RNA-DEPENDENT RNA POLYMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003968
all species →
Molecular FunctionRNA-dependent RNA polymerase activityInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0030422
all species →
Biological ProcesssiRNA processingInterproscan
GO:0031380
all species →
Cellular Componentnuclear RNA-directed RNA polymerase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERYMEP00000030467.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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