Gene detail

Detailed information of BRAKERYMEP00000031898.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044169170.1, DNA-directed RNA polymerase I subunit RPA1-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000031898

ATGAAAGTGCTGGATTATGGGTTAATTGCAGTCGCTGAAGAGCTCCGAGATATTGCTAATGAGGTTGTGAACCTTCAAGAGTCAAGTGATGGCAGAAATGACATTAAAGATGAAGATGTAAACGTTGCTCTGGACAAACATGTAAAAGATGCATTGAAAGGTTTGGACAAGACAGAGGCCAGGGGAAAGGCTGTGGCCAAAAATGTTACAAACTTTAGACATCAGGTCATTAAAGACTTGATGAACAGGTACATGATCAACAAGAAATGTCATTGCCCAGTTTGTGGTGCACCTTCTCGGGAAATAAGGAGTGAATACAATAGTAGCTTATTTTTGAAAGGATTGTCTGTTAGAGTTGCTAATAAGTGGGTACAAAAGACTCAAGCTGCGTCTACACGACTGTCGGATACTGTTGCAGAAAATGGCGTGGAGGAAAACTGTACCACAGGACGTGGAGATAACAGAGATGACCAAATAAAGAAGCTTACACAGCAGACTTATTTGACACCACTTGAGGTTAAAAATCAAATCTTTAAAATCTGGGAAAACTATGGTGACTTTCTTGATGTTCTTCTTGGAGCATATCCATCTCcaactgcaaaaagaaagcgTTCATCTGCTGATATGTTCTTTCTTGAAGTCTTCCCGGTCCCTCCTTCAAGATTTAGACCTTTATCAACTGTTGGAGACAACCAGTTTGAGAATCCACAGACTTTAAACCTGAACAAGGTTATGAAGGACTGTGTGTTGGTAAAGGAGTGTCTGACAGATTTAAAGAATCCAACAACAGAAGCAGCACCttcaaagaaaaaggtttttGGTAAAAGTCCTCCTGAAACTGTCAACAGGAAGACACCAACTGAGAGACTTCACGATGCTTGGCTTGGGCTTCAGTCAGGCGTGAACTGTTGCATCGATAGTGATCTTTATAAGATGTCCCCTGTAAAATTTCCAGGAATAAGACAGATTCTTGAGAAGAAAGATGGGTTGTTTCGGAAGAACATGATGGGGAAGAGAGTGGATTATGCTTGTAGATCTGTTATATCACCGGATCCTTACATCAATGTGAATGAAATTGGAATCCCCAtgGTTTTTGCATTGAAGTTGACGTATCCCCAACCTGTTAATCATTGGAATGTCAAGGAATTAAGACAGGCTGTCATCAATGGCCCCCTTCAGCATCCTGGTGCTACTCTTGTGGAACAAGAAGATGGCAAACGGACCCTTCTGAGTAAAACTGATGCCAACCAAAGACAAGCAATAGCCAAGTGTCTTCTCACACCAACCACTGACACCAATACTATTAGTCCTTGTAAGAAGGTTTATCGTCACCTCCAAAATGGCGACATGTTATTGGTAAACAGGCAGCCCACTCTGCACAGACCCAGCATGATGGCCCATAAGGCTCGGATTCTTCCAGGAGAGAAGACCATCCGACTTCACTATGCCAATTGCAAGTCGTACAATGCTGATTTTGATGGTGACGAGATGAATGCACATTTTCCACAGAATGAGCTGGCCAGAGCCGAGGCCTACAACTTGGCCAGCACAAATTACCAATACCTGGTACCCAAAGATGGGACGCCTCTCAGTGGACTGATCCAAGATCATATGGTGGCTGGTGTGAAGATGACAGTCAGGGGTCGAATGTTTAACAGGTCCGACTATCAACAGCTTGTCTACAGTGCTCTGAGCTTTAAGAATACCAAGATAAAGTTGTTGAAACCTTGTATCATGAAACCTTGTGAACTCTGGTCAGGAAAGCAGGTTGTGTCCACTGTTCTGATCAATCTCATTCCCCCTGGAGCGAAAGCTCTTAGCATCCATGGTAAAGCCAAAATAGCTGGAAAGAACTGGATAACACGGAAACCAAAAGGGCAGTTTCTTGGAATTCCTGTGCTGAAGGACGATGACATGTCAGAAGCTGAGGTAGTGATTCGTCAGGGCGAGCTGTTGTGTGGCGTGTTAGACAAGGGGCATTATGGACCCACTCCATTTGGCTTGGTTCACTGCTGCAACGAGttctaTGGGGGGGCCGTGTCCGGGGATCTCCTGACTTCATTAGCCAGAGTGTTCACCACATTTCTGCAGTTCCATGGCTTCACTCTTGGTGTCGAAGACATTTTAGTAAATGAAAAGGCTGATAAGAAAAGACGTAAGCTCATAAAAAAGGGAAGATCAGCTTGTGATGAAGCGGCTATTGAGGCTCTTGGCCTCCCAGAGGACTGTGAAAGGTCAGTTCTGGAGCAGAAACTACAGGCCAGTCATCACAGCAAAGATGGCGGAGACATGAAACAGCTCGACTTGAGcatgaagaagaaaacagaccACTATCAGGACCTGATCAACAAAGCATGTATTCCCTTCGGCCTGCTCAAAAGATTTCCGGACAACAATCTTCAGTTGATGATACAATCTGGTGCAAAGGGCTCGTCAGTGAATTGCATGCAGATATCATGTCTACTGGGGCAGATTGAACTGGAGGGACGACGGCCGCCGCTTATGCCCAGCGGAAGATCTCTGCCGTCATTCCTGCCCTACGACACGAGCCCTAGAGCTGGAGGGTTTGTTGACGGGCGCTTCTTGACTGGCATAAGGCCTCAAGAGTATTTCTTTCACTGCATGGCTGGGAGAGAGGGTCTGGTGGACACGGCAGTAAAAACAAGTCGCAGTGGCTACCTGCAGCGCTGTCTTATTAAACACCTGGAGGGTCTGCAAGTCAGCTATGACCTGACTGTTCGTGATAGCGATGGCTCGGTGGTGCAGTTTTACTATGGCGAGGATGGGTTGGATGTCATGAAAACGTCTTTCTTGTCTGAGAAGCAGTTTCCTTTCATGGCAGCCAATTACAAGATCTTTCTACAGCAAGTTAACCCAAAAGAGCTTCTTCCGCATCTTGATTCGGACAAAGCAGCCAAGCTTGAAAAAAGGATCGTCGAATGGAAGAAAAACCATGCAGTCGACGGTTCAACAAGAACTTCTCCGTTCCTTTACTTTGCTCAAGACAACACGAAAGCTAAAGATGATGAAAATACGGTTGACGATGCGCATAAGTTTGGACGCACAAAGGCCGTCCTGAAGCTTTTCAGAAAGTGGAGGAAAGCGCCCAGAAATGTTCGCGAGTGGTATAGCAAGAAAGTCACAGGGTGCCCAGATCCCGTGCTGTCTTGTCTTCAAGCTGACAGGCATTTTGGTGCAGTGTCGGAGAAGTTTAATGATTCTGTTGTGAAGTACACCGAAGTCAATCCTGACAAATGCCTGACTGATGAAGAATTCGAAGAGAACGGGAAACTGTCAGCTTACAAGTTCAGGAATATAATGTACCTGAAAGCCTTCCGAGCACTGGCGGAACCAGGAGAAGCTGTAGGCTTGTTAGCTGCACAGTCTATTGGTGAACCCTCCACCCAGATGACACTGAACACTTTTCACTTCGCTGGTCGCGGTGATATGAACGTTACACTAGGAATTCCAAGACTAAGGGAAATTTTGTTGACTGCTAGTGCTAAACTCAAGACGCCAAGCATGGACCTTCCTCTGAAGCCAGGaccaaaagcaaagaaacgCGCAAAGCAGCTACAAAGAACATTTACGAAGGCCACGCTGGCTCAGGTGCTGGAGTCGGTTGATGTCTGGGAATCGCTATCACCAAAGCAAGGAGGAAATAGGGCCAGAACATATCGTGTTCGGTTTAAATTTCTCAAGGAGACATGTTATAAGGATAAATTTTGCGTGAGAGCTGGATTGATTCTTCGTTATGTGGAGtcaattttcattaaaaaggTTGTGTCTGCCGTTTTAAGGGCGATAAGAGCGAAAACTACAGACAAGGTAATCAACTTCTCGACAGACAACGATCAGCCGGGAAATATCGACAACGAGGACAGAACTGATGCCCAAGaccatgatgatgatgacgacaatgctGGATTATCTGATGAAGAAGCCGCTGATGGCGATGCTAGCGAAGCCAAACAAAGGCAGAGACGCGAACAGCACGCCAGTTATGAAGCTCCAGATGAGGACGAACAAGATGAAGTCGCATCATACCAGAGTGAAGGTGACGATGCCTACGAGGATGACACGAGTTCAAGAACGGAATCAACTTTTGGAGATGTGGAGGACGAGAATTGGTATAATGATACAAACCAAGAGGAAACGAAGAAAACCAGACGACAGTCGCGTGTTGATAGCGCGCGAGTGCAGCGGGTTTTGGAAAGCGATCTTCACGTGGCATCATACTCTTATGACGTCAAAAAAGAGGAATGGTGTGAAGTTTCCTTGAAGGCTGTTGTTTACGAAACTCCAGGCATTAGCCGATGCTTTCTGATAGAAAATAATGATACAACAGCTCTTAAAACAGAAGGCGTTAACTTACAGGCTGCTTGGGAACATGAGGACGTATTAGATTTGACAAAGATCTATACAAACGACATTCACGCCATGGCAAACACCTATGGAATTGAGGCAGCAGGAAAAGTTATAACGCAAGAATTAAACAACGTGTTCGGTGCCTACGGAATTCGTGTGGATCCACGccatcttagccttgtgtccgACTACATGACCTATGAAGGGACCATCAAAGCCTTTAATCGCATTGGAATCGAATCGAACTCTTCTCCTTTTCAGAAAATGAGTTTTGAAACCACGACTCATTTCCTGCGAAGAGCTGTGCTTTCTGGAGACACGGAGAAACTGTCTTCGCCGTCGTCTCGACTAGTGGTTGGGCGAGTTGTTGGCAGCGGGACAGGGTGCTTCGAACTACTGCAACCGCTGTATTAA

Transcript

BRAKERYMET00000031898

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95602	DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens OX=9606 GN=POLR1A PE=1 SV=2
O54889	DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus OX=10116 GN=Polr1a PE=1 SV=1
O35134	DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus OX=10090 GN=Polr1a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002874 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04998 all species →	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF00623 all species →	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan
PF05000 all species →	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan
PF04983 all species →	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR007081 all species →	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR000722 all species →	Domain	RNA polymerase, alpha subunit	Interproscan
IPR038120 all species →	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR042102 all species →	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR015699 all species →	Domain	DNA-directed RNA pol I, largest subunit, N-terminal domain	Interproscan
IPR006592 all species →	Domain	RNA polymerase, N-terminal	Interproscan
IPR007083 all species →	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR007066 all species →	Domain	RNA polymerase Rpb1, domain 3	Interproscan
IPR047107 all species →	Domain	DNA-directed RNA pol I, largest subunit, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02999	RPA1, POLR1A; DNA-directed RNA polymerase I subunit RPA1	EC:2.7.7.6	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.