Genomic Location: BLFK01000930.1:938372...950062
NR annotation: XP_029191912.2, uncharacterized protein LOC114958342 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000031994 |
| Transcript |
| BRAKERYMET00000031994 |
| Protein |
| BRAKERYMEP00000031994.1 |
| UniProt accession | Description |
|---|---|
| P40483 | Putative zinc metalloproteinase YIL108W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YIL108W PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004570 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01419 all species → | Jacalin | Jacalin-like lectin domain | Repeat | Interproscan |
| PF12044 all species → | Metallopep | Putative peptidase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR053002 all species → | Family | Zinc-dependent metalloproteinase M10B | Interproscan |
| IPR036404 all species → | Homologous_superfamily | Jacalin-like lectin domain superfamily | Interproscan |
| IPR001229 all species → | Domain | Jacalin-like lectin domain | Interproscan |
| IPR021917 all species → | Family | Uncharacterised protein family, zinc metallopeptidase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21054 all species → | ZINC METALLOPROTEINASE-RELATED | Interproscan |
BRAKERYMEP00000031994.1 in Astreopora myriophthalma.BRAKERYMEP00000031994.1.Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
