Gene detail

Detailed information of BRAKERYMEP00000032727.1 in Astreopora myriophthalma

Genomic Location: BLFK01000951.1:124548...145792
NR annotation: XP_029201955.2, mitogen-activated protein kinase-binding protein 1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERYMET00000032727

ATGAACTCCGACAAAGGTGGCAGGATTCCTCCTCCTACGAAAAGGGTTGTTGTACGGAAAGCAAACAGTCACCGGGATTTGCGTCCTTTAACGGAGCGGGCAACTCTTGAGAAAGTTTTGGGTTTGACCGTATCCAAAAATGCGGCGCTTGCATGTGATCCCATATCTGGGATTATTGCCTACCCGGCCGGATGTGTGGTGGTCTTGTTCAACCCAAGAAAAAACAAGCAGAGTTTTGTTCTCAATACTTCAAAGAAAACTATCACTTCTCTTGCATTTTCTGGAGATGGCAAATACTTAGCAACAGGAGAAAGTGGTCACATGCCATCAGTGCGAATCTGGGATATGGAGGATCCATCCCATCCACAAATAGCAGAAATGACAAAGGGACATAAGTTTGGTGTTGCATGTGTGGCATTCTCCCCTAATCTGAAGTTTGTTGCATCTGTTGGATTCCAGCACGACATGATTGTGAATATCTGGAACTGGAAGGTATCTGCTCTGTCATTCTCTGAGAATGGCAGCTACTTTGTGACTGTGGGTGTTCGTCATGTCAAGTTTTGGTATTTTGATACAGAGTCCAACAAATCTAAGGTATCAAAAACACTAGTTATAAATGGCCGAGCAGCACTTTTAGGAGAACAAAGGAACAACACATTTTGTGATGTGGCGTGTGGCCGTGGACTTAACTCTGACATAACATACTGTGTGACCAGTTCAGGGTTACTATGTTCCATCAACAGCAAGAGAGTGTTGGATACTTGGGTGGAGCTCAAGACATCTAATGCTCATGCCATAGTGGTTAGTGAACAATTCATAGTGTGTGGATGTGCAGATGGAATTATAAGaGTATTCAATCCTTTGAAGCTGCAACACATTGTAACTCTTCCTAAACCTCATTTTCTGGGTGTTAACATAGCAGAAGGCATGGATTTTAGTAACCCACTGTCAAAGGCGGAAAAAGCAGTGTACCCTGATACAGTCGCTGTGGTACTTGACACTGTTAATCACAGGttgatTTGCATTTACAATGACCACAGTTTGTACACTTGGGATGTGAaagacatgaaaaaaattggaaaaacatGGTCATCTCTTTACCATAGCACCTGTGTGTGGGGAGTTGAGGCTTATCCCAGCATACCAGACAATCTGCAGGCTGCCTTACCCCCTGGATCATTCCTTACGTGTTCATCAGATGATACTATTCGGGTCTGGAACATTCAAGATGGAGCAAGTATTTTATTTGAGAGAAATGTTTACAGCAAGGAGAGTACTAAGATCATTTATACAGGAGAGACAGTTGACAGTTTGAAAGATGCTGCTATCAGTCCAGCTCTAAAGAACATGCGAGATTCCACTGTTGATTCACGTAATACTGGAGCAAGATGCCTGCGTGTTAGCCCTGATGGACAGACACTTGCTACTGGTGACAGATCTGGAAATGTCAGgGTCTATGATTTGACATTCTTTGATGAGACAGCAAAAATTGAAGCTCATGAATCTGAAGTCTTGTGTGTTGAATTTTCACCCATTGAAAGTGGTCATAAACTGTTGGCATCAGCTGGGCGAGACCGTCTCATTCATGTATTTGATATGCAGAATAACTTCAGTTTTGTGCAAACATTAGATGATCATTCAGCCTCAATCACCTCAGTCAAGTTTAACAaGTCTGAATCAGATGAATTGCAGCTTCTGAGCTGTGGAGCAGACAAGTCCATCATATTCAGAACAGCCCAGCAGACTCCAGATCTGCAGTTTGTTAGAGCAACAAATTATGTTGGTAAAACCACATTTTATGACATGGATATTGACGTTTCTAGGAAGCATGCAGCTACTGCTTGTCAAGACAGAAATGTGAGGGTTTATGATGTGAACACtgggaaacaaacaagatgctATAAAGGAACTTCAGGTGATGATGGAACTCTTGTCAAGATTACGTTGGATTCCTCAGGGACTTACGCAGCAACAAGTTGTTCAGATAAGAGTGTGTGCATCACAGAATTTGACACAGGGGAGTGTGTGGCCAGCATGTCTGGGCATTCTGAAGTTGTGACTGGAATTAAATTCACTCTTGACTGTAAGAATCTTATTTCTGTTTGTGGAGATGGATGCATATTTGTGTGGAAAATCCCTTCAACATACACGCAGAATATGGTAGAAAAACTCCAAGCGCTTGGACATGAacctgaaataaaatttcaatttgGGACACCCATAAGGCGTGAGACCTACAAAGTGTCACACCCCTCCATAAAGGAAGAGACTGAACTTTCATTTGCAGAACCATCTGCGTTCTCTCGGCCAGTCAGGGAGCCGAGTCCTCCAGTCAATTACCGCTTTAGTGTTGGACAGTTGCCTACATGGGCTAAAAAGCAGCTCATTGCCGAAGGGAGTGAAACAAGTTTTCCTCCAGAAAATGATAGCAATAGCCAACACGCAGTTCACCCTGGAGGACGATGGGCACAGCGAATTCAGAATGGCAGTATTTATGTGGCTAGAGATAATGCCCCCTcacagaaaattgtttttccTCTTAATCCAGCAGATCGAAAGCGATATACGATAGAACCAATCTCATTACAAGAACAAATGAGAGCTTTGGCAAACAGCCCTCTGGAGAGACGCTGTTCTCTTACAAGAGGGGAGGACGATGatctgttttcatttgatggCAGAGCAGCATTTGATCAACTTACTGAGGATGATATGGAGGATCAGGATACCAGCGAGGCGCCACCTGGAGTAACCGTGTCACGTGGCAGTGACATAACGATGTATGCCCCTCGGAAGAGCAGTTTGATTACCCTGGAAACGGGAGAGCTGAAGTTTGAGGAGGCAAAGGAAGTAGAGGAAGTCAATGATGGAGAAACAAAGGAAGTGATAATCTACCTTCCGCCAAGCCAGGATGATTTCGACAGTGAAGTTGCCAGGTCAGAAAAATATCGCAGTATAATTATGATCAGGTTCTTTCGTGTGTTTTTGGATGGAAATGTAAGGTGCTTGTCATTCGTGCCTTGGACGCAATGTACACGCAGAGGTCGCGTTAGGGCCAATACTTATAACTAG

Transcript

BRAKERYMET00000032727

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U3T8	WD repeat-containing protein 62 OS=Mus musculus OX=10090 GN=Wdr62 PE=1 SV=2
Q6DFF9	Mitogen-activated protein kinase-binding protein 1 OS=Xenopus laevis OX=8355 GN=mapkbp1 PE=2 SV=1
Q8HXL3	WD repeat-containing protein 62 OS=Sus scrofa OX=9823 GN=WDR62 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002145 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44813 all species →	MITOGEN-ACTIVATED PROTEIN KINASE-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043124 all species →	Biological Process	negative regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0046330 all species →	Biological Process	positive regulation of JNK cascade	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000032727.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.