Gene detail

Detailed information of BRAKERYMEP00000032848.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044178044.1, uncharacterized protein LOC122960146 isoform X1 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000032848

ATGCCCAAAGGTCAACAAAGAAAAGTCAAAGGTGCAATTTGTAACGTGCCAGTTGAATGTGATCAGACAAGTAGTCTTTTGCCACGCCCTCCTGAGAGATCTGGTATAATCATGTTGAAACTCAAGAGAAAGTTACAATTCAGAGGTCATGTATATTTTCAAGCAGTAAGGCCTCACTTTGTATTACAAGCCTTGCAATGGCTTAAGGCAAATAATATGTTGTATAAGGACATACAAATTGATATTAATAACATTGATACAAATTTGACTGCACTACATGATGCAGATAATTCAATAGCAGAAAATGAGGCTACATGTACCGATGACAACTCAATTACAGATGATTATGAAGAAGACAGTGAAAATTCAGCACCAGTCAATCAGGAAAAAACTTCATTCAAAAATCAAACCAGTGATTTAAATGACTCGAGTAATGATTCTGAAGAAATTGAGGACCCTTTAAATGAGCACAGAATGCCAATTACTCAAACTTGCTTGCAATCCATCATCCCCAACTATCCTGTTGTTGTAAATAACAATGAACAGTCTTCAGGAAATGAGGTTTACAATATTGCACCTGGAGAGAACAAACACCCTGTTTCATTCATGACTGATAAGCAATGTGAGGAACTAGCTTTCCCAGTATTGTTTCCTAAGGGAAGATATGGGTACACCACTGAACGTGAAATTAAGCTATCACCAGTTAAGTACTTTAACTCACGACTCCTACATTATAGTGGAAGATTTGCCACAAACCCGGAGTATCTTTTTTTTGCGCAGTTTATAATTGAACAGAAAAAAGTTTCAGACAGTATCAATattgcattaaaaaaggttCAAGGTCATTCTGTCACTGCTGCCCAATTAAGATCCAGTCCGCAAGGCTTACAAAATTTAATTTGTCAAGACCAAGCCTATTTATTTTTGAGACAAATTCCAGGTACTCCACCTTACTGGCAAAAGTTTATGTATGAGGTAGTTGCTATGGTGAAACAACTTGGTATTCCAACATGGTTTATGACATTATCCTGTGCTGACCTTAGATGGCCTGAACTATTCCAAATCATTGCCAGAACGGAAGGGAAAAAGATGACAAGTGAACAACTTGATGCATTATCTTACAATGAAAGGTGCCATATGCTGAATACAAATCCCGTTATAGTAGCTAAGCACTTTCAATATAGAGTGGAAACATTTTTCTGTGAAGTACTACTTAGCAAAGCAAATCCAAttggtaaaataatttattatgcatTACGCATAGAATTTCAAATGAGGGGTTCTCCCCATTTACATGCATTAATCTGGACTTCAGACTGTTCTAAACTGACTGATGACAGCAAGCAGGCTTATATTGACTACATAGATCAACATGTACAAGCCTACCTGCCAAGTGAGGAAGAAGATCCTGAACTTCATGAGTTGGTTAAAACATATCAAAAGCATACCCATTCCATATCCTgtagaaaatataaaaacattCAATGCAGATTCAATTTTGGTCAGTTTTTCACTAATACAACAATAGTAGCAGAACCACTGTCTGATGACCTGGATGAAGCAATTAAATCTGACTTGCTAGACAAGCGCAAGGAAATCTTAACTTTAGTTAAACAACAAATAGATGCTGTTTTAAATCCCAGCAAGCCCAGCTATGATTCTacattaactgaagatgacatttTTAATTTAGCAGGCATTAGCAAGGAAGCGTATTACTCTGCTCTTTCTATTTCACCTGATTCTGACTATGAACTACATCTTAAAAGGCCAGTAGACAGCTGTTTTATAAATAACTACTTTGTAGCTGGCATAAATGGCTTTGCTGCCAATGTCGATTTGCAACCTGTATTTAATCATAACAAGTGTGTAACATATGTATGTTCCTACTTTACCAAGGATGAAACTGAATGTTCACAAGCAATCATAAATTCTGCAAAAGAAGCCAAAGCTGCAAACATGAACGTCCAAGATGGATTGAGAAAAATTGGGGCTGCCTTTCTCTCAAGTCGTGAAGTTAGTTCACAAGAATGTGTGTATCGTTGTATGCCTGAATTATGGCTGAGAAAGATTTTTCCGGCAACAGTGTTTGTTAGCACAGATTTACCAGGTAAAAGACTGAGAGTAACAAAATCACAACAGGATCTTGAAGAGCTTGATGATGAGAGTACAGACATCTTTAAATCCAATGTTATTGAAAGATATTCACTGAGACCTATAAATATTTCAGCAGTCAATGATGTTTGTTTAGCAGAGTTTGCTGCATATTATTACAAAGATTATAGAAAGGAAAACAGTGAAACTATTGATGCTCAACCGCAAGTTCTGATTGACAGTGCAATTGAAACTCAACATTTTGATAATGACTCATTGCCAGATGTAATAAGGCTCATTAATACCAATGAAAAAATGAAGCGCAGAAAAATTAAAGCAGTTATAAGATATCACAAACCTAATAAACAAAAGGAACCTGAACTGTATTTCCATCATTTGTTGATGCTTTACTATCCATGGAGAGATGAAAGAAACCTTCTTGGTGATGATAACACTTGTGTATCTAAATTTTATGAGCCCAATGTTAAAATTATTGtagaacaaaacagaaaaacatttGAACCAGATGCAGAAGCAGTAACAGAAGCACTAGAATGGCTAAGAAACAATCAGGGTAGCATAATCCATTCATATGATTCTTTTGGTGCTCAAGAAAATGCAGATATACAATTAGAGACTCAAGATGAATCATTACCAGAGGAATCATTTAATGAACAGCAACCATCACATCTAGGAGAATGTTCACAAACTGAACAACATGGTCAAACTGGAATATCAATGCACCGTCAACCAGCTGAAATATCTGATGATCAACTAAGGGAATCTGTCCGATccttaaatgaaaaacaacgcCAAGCATATGACATTGTACTGTCATGGTGCAGagacaaaatgaaaaatttgaacTGCTTAAAATGTAAAGAAGTAGAACcaatttatctatttattactGGAGGTGGGGGTGCAGGAAAAAGTCACCTCATTAAGACAATCTATCATACTGTAGTCAAAACGTTTAGATATGGAGGTATGAATCCTGAGAATCCTACAGTTTTACTACTAGCACCTACTGGAGTAGCTGCCATTAACATTGATGGAACAACGATAAATACTGCGTTAGCAATCCCTAAGAATACAGGTGATACATTGCCTGCCATGTCAGATCAAAAAAGAACCAAAATGAGACTATCATTATCACAACTAAAGCTACTAATAATAGATGAAATATCTATGGTGTCAAATACTGCTTTACTTCATGTTCACCAAagattaaaagaaatatttgttaCTTCTAGCTCTCAATTATTTGCTGGTTTAAGTGTAATTGCTGTTGGTGATTTATATCAACTACCACCAATACAAAGAAAATCTGTTTTTGAAGAATATAAATTCAGAACAGGGTCACAGACTGATGAGGATATTAACTGTATTCAGTCCAGGTCAATAAGTCCATTGGATGATAACTACCCAACAGATGCTTTACACATATGGGCTGAGAATAATCCTGTTACACAGcataacaacaaaaaactaaTGCAAATAAAAAGACCATTATATCAACTGACAGCCATTGATCAATGTCCACCCAATGTTTCAAAACAGGATATTGACAGAGTACTAGCATCAGGAAGATCAGAAACAGGTGGACTTGATCATGACATCCTTATCAAAGAAACAGCCAGAGTTATGTTAACCACTAATATTGACATAGTAGACAGGCTTATTAATGGTGCTAACCTTTCTGGAAACAACAACATACCTGCACGAACAACTTCATCAAGCATTTCAAGATCAACTGACCCATCTGAAACAACTGTGCCAAGACCAAGTTCAACCTCTTCTCCGAGAAAAATCTCAACTCAATCCCATAAAGATCCAACCATTGTTGGTTATCTCCACAATGTTAGCCCAGTGAAATTAAGTGCAAAAGGATCTGAATACTTCTCATTTACAatccaagaaaaagaaaataaaataaaagcgtTGTGCTTTTCACCTAGAAAGCATAAACCAAATGTGGAAAGCAAAGCCGAAAGTGGAACACCATGCAAATTGACAAAATTTTCCGTCCACGCAACAGAAGAAGATGTAATATGGGTAAACGCAGCTACACAAATCAACAATGCTTTGGAAGcaaaagttgatttttgttgcgacACCCACTACAATGAAACTCCAGTGGTTACCACAAAAGATCTTGACGACATTCAAGTTTATCAAACTGTCACAGTTCGTGGTATGGTCCTTTTTGGAGATAACAAAGCACAGCCTGTCCCAACAAAAACTGATCTTATTAAAAGAGAAGGATCCTTTGTTGACGAATTTGGAAATATTCCAATCACTATTTGGAACAAGCACATCGAAAGCACACAAGAAGGTTTTTATGAGATCCAAAACATTCGTCTTCGACAATTTAAAGGCGAAAAATACCTATCCTCAGGGATAGACACAGTCTTTAAGAAATTAACTGAAAATCTACCGCACATCTCTGACCAAGAAATCAAAGACGCAAAAGACGAACTCAAAACGAACGAAATAATCTGTGAAAATATTCAAACCGTAGACATAATGGTGTTTTACAACTGCCTGACTTGCTCCAAGAAGGTCCAATTTCAACAGAGTTCGCCTATGCTTAGGTGTATGAACTGCCAGTCACGCTTTCTCGCCAAGAATGCTACCAAAACTACGACAGCACGTATTTCTGTCAAAACAGGTGACCAAGCTGTGTGGTATTCATTGTTCACGTCCAGTCTAGAAACTATCATAGAAAGGTACAACAGAGATAATGGTGAAGCAGAGACCATCGAACACATAGATGACGACAAGCTATGCCAGGTTATTTTGACAACAACAGGTATAAAATTGCGCGTGAACAGCACGAACACTGTACTgggcatttcttttgtttga

Transcript

BRAKERYMET00000032848

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q580X6	ATP-dependent DNA helicase PIF5 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=PIF5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000138 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05970 all species →	PIF1	PIF1-like helicase	Family	Interproscan
PF20209 all species →	DUF6570	Domain of unknown function (DUF6570)	Domain	Interproscan
PF14214 all species →	Helitron_like_N	Helitron helicase-like domain at N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051055 all species →	Family	PIF1 DNA helicase	Interproscan
IPR010285 all species →	Family	DNA helicase Pif1-like	Interproscan
IPR046700 all species →	Domain	Domain of unknown function DUF6570	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025476 all species →	Domain	Helitron helicase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47642 all species →	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000032848.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.