Detailed information of BRAKERYMEP00000033213.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029202352.2, tRNA:m(4)X modification enzyme TRM13 homolog [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BYH3tRNA:m(4)X modification enzyme TRM13 homolog OS=Mus musculus OX=10090 GN=Trmt13 PE=2 SV=1
Q9NUP7tRNA:m(4)X modification enzyme TRM13 homolog OS=Homo sapiens OX=9606 GN=TRMT13 PE=1 SV=2
Q12383tRNA:m(4)X modification enzyme TRM13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRM13 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004197 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05253
all species →		zf-U11-48KU11-48K-like CHHC zinc fingerDomainInterproscan
PF11722
all species →		zf-TRM13_CCCHCCCH zinc finger in TRM13 proteinDomainInterproscan
PF05206
all species →		TRM13Methyltransferase TRM13FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022776
all species →		DomainTRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainInterproscan
IPR021721
all species →		DomainZinc finger, CCCH-type, TRM13Interproscan
IPR007871
all species →		DomainMethyltransferase TRM13Interproscan
IPR039044
all species →		FamilytRNA:m(4)X modification enzyme Trm13Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12998
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008168
all species →		Molecular Functionmethyltransferase activityInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0008175
all species →		Molecular FunctiontRNA methyltransferase activityInterproscan
GO:0030488
all species →		Biological ProcesstRNA methylationInterproscan
GO:0106050
all species →		Molecular FunctiontRNA 2'-O-methyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15446TRM13, CCDC76; tRNA:m4X modification enzymeEC:2.1.1.225
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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