Gene detail

Detailed information of BRAKERYMEP00000034214.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029188497.2, structural maintenance of chromosomes protein 3-like isoform X1 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000034214

ATGTACATCAAACAGGTTATTATTCAGGGCTTCAGGAGTTATCGAGATCAGACAATTATTGAACCATTCAGTCCCAAACACAACATCATTGTTGGTAGGAATGGATCTGGgaaaagcaatttcttttttgCTATCCAGTTTGTTCTCAGTGCGGATGAATTCAGTAACCTGCGTCAGGAAGAGAGACAAGCACTTCTTCATGAAGGTACTGGGCCTCGTGTCCTGTCAGCTTACGTGGAACTGATATTTGACAACAGTGACAACAGGATTCCAATTGAGAAAGATGAAGTGTCTTTGCGTCGTGTGATTGGCTCTAAGAAAGATCAATACTTTCTGGACAAAAAGAATGTGACAAAAAGTGATGTGATGAACTTGCTTGAAAGTGCGGGATTTTCTCGTAGTAACCCATACTACATCGTCAAGCAAGGAAGGATTAACCAACTGGCTGTAGCAAAAAACCATGAAAGACTGAAGTTGTTACGGGAGGTTGCAGGAACAAGGGTGTatgatgaaagaaaagaagaaagcaagACTATTTTAAAGGATACTGAGGGGAAAAAAGAGAAGATAGACGAGTTGCTGAAGGACATAGATGAACGACTAGAGACACTGgatgaagagaaagaagaacTCAAAGCATATCAGAAGTGGGACAAGGAACGTAGATGCCTTGAGTATACAATTCATGACAAAGAAATGCGAGACACGCGGGAAAAGCTTGAACAGCTGGAAAACTCCAGGCAGCAAGAAACAGACAAAGCATCAATgttacaaaaagaaattaaagaggCTAGCAATAAAGTTCAGACATCGACTCAGAGTCTTCGTGAAGTGATGGATCGCATAGCTGCTGCAAATTCAGAGAGACAACAACTTGATGAAGAGTGTCAAGACCTCATAAAAGAGAGAACAAAGCTGGAACTAGACATTAAGGATCTTGAAAGGACTGTAAGAGAAGATAGTGCTCTGAAGGTTCAACACCGAAATCAACTTGGAAGTCTGGAGCAAACAATCTGCTCCAAAGAAGAGGAATTAGGTGACTTGTTGCCTAGTTACAACAGGcttaaaacagaagaaaacgaGTGTACTTCAAGGATGAAAGTGTGTGAGAGAAGACGCACTGAGTTATATGCCAAGCAAGGTCGTAAGAATCAGTTTACGTCAGCAGAGGACAGAGACAGATGGATTACAGAGATCGTTGCCATTCGAGTGGATGTTCAAAAACTTAGAGGTGCAGTTCAAGAACTGACAGATGAAATACAGGAAAGAACAGACAATGCAGATAAACGGAGGCAAGATATtgaaaaagccaacaaaagacATGCAGAATTGAAAAAGGCGAGAGATAATGCAACAAACGGTAGAAAAGAGTTGTGGAGAGAAGAAGCAACAATTGAACAAAGCCTGCAAAATACAAGGGAGGAACTGAGTAAGGCAGAAAGGAATTTAAGGAGCACAGCAAGCAAACATGTGAGTTATGGTCTTGACACAGTTAAGAAGATTGTTCAAGAAAGAGGCATTGATGGAGTTCATGGGCCACTTATTGAAAACTTTCAGTGCGACAAACAGTTCTTTACTGCTGTTGAAGTAACTGCAGGAAGCAAACTTTTTCACATCTTAGTGGACACTGATAAAGTTGCAGCACAGATCTTGTCCATCATGAACAAACATAAACTTCCAGGGGAAGTAACATTTATGCCTCTCAACAGACTACAGAGCAGAGAGCAGGAGTACCCTACTTCACCAGATGCTCTCCCAATGATTAAAAAATTACGGTTTGATGAAGCATTCAGGCCTGCCATGAACCTTGTCTTTGGTAAGACCCTCATTTGTCGGAACATGGAAGTTGCTTCACAGTTTTCCAAGAGTGAGAATCTTGACTGCATAACTTTAGACGTGGACACTGATAAAGTTGCAGCACAGATCTTGTCCATCATGAACAAACATAAACTTCCTGGGGAAGTAACATTTATGCCTCTCAACAGACTACAGAGCAGAGAGCAGGAGTACCCTACTTCACCAGATGCTCTCCCAATGATTAAAAAATTGCGGTTTGATGAAGCATTCAGGCCTGCCATGAACCTTGTCTTTGGTAAGACCCTCATTTGTCGGAACATGGAAGTTGCTTCACAGTTTTCCAAGAGTGAGAATCTTGACTGCATAACTTTAGACGGGGACCAGGTTAGTCGCCGAGGGGCACTGACTGGAGGTTACTATGGAAACAGAAAATCACGCTTGGAGCTGCAAGATAGTATATGGAAATTACAAGAAAAAGTAGAAGGAGAGGAAACAAGAAGAGATCAATTGAAGAGTGAACTGGAAAAACTTGATTCTGATGTAACTGTTATATTGGGAGAATTACAAAAGGTAGAAACACAGCAAGTCCAACTGAGGGAAACTtatgagaaacaaaaaattgatGTGAAAgcaaaaacacaagaaaagaaaacagctgaGCGAACGTTGGAAGCTAAAGAACAGGGTCTGTCGCATCTTGAGGTGGATCTGAAGTCTATGCGTAGCACCATGAAAGCCTTGGAGGATGAGCTGGGGACTGCTTTGGTATCTCAGCTTAATGCACAAGATCAACAagagGTTGATGACTTAAATAGTGAAATCATGACACTTCAAGAAAGATTAAAAGCTTCTCTGTCAAATAGAACAAAGCTTGAAGCCAAAAAGAACACCTTGGAAAATGTGTTGAACAACAATCTCAAGAGAAAGCGAGATGAGCTGAAACAGACTTTGGAGGAAATCTCCCTGGAAGACCGTAATTTACAACTGGAAACTCTTGGTGCTGACTTAAACTCTGTAGTTGaggctatttctcaaagtacagccAAGCAAAAGGAActtgaagaagaaataaatGCGTTGAACAGGAAAAAGACTGAGGAGCAGACGGCACTGGATGAGTGGAAGAGTGTGGAAAAACAAAGAATGGATGCCATCAATGATGATGCCAAGCATATGGAGAAAATTGCCCATAAAAGAAGTCTTCTTATGAAAAAGAAAGAAGAATGTACAAAGAAGATACGTGAGCTGGGCTCGCTTCCTGCGGATGCATTTGATAAACATCAAAAGACTCCAATCAAGACACTGTGGAAAAAATTACACCAGTGTAAtgaagaactgaagaaatacAGCCATGTCAATAAAAAAGCGCTGGACCAGTTCGTTAACTTCtcagaacagaaagaaaagttAATGAAACGAAAGGAGGAACTAGATAAAGGTTATCAGTCAATTGTGGACCTAATGGATGTTCTTGAGCAACGGAAACACGAGGCTATCCTGTTCACATTTAAACAGATGTCCCATTACTTTAGTGAAGTATTTAAGCAGCTTGTGTCTAACGGTAAAGCTACGTTGGTGATGAAGACAGATCCAGTGGAACAACCGGAAGAGGAAGAGAGCGAGGCATCTTCGCAGCAGTCGAGTGTGCCCCTCGTGGATCAGTTTACGGGGATTAGTATTAAGGTATCGTTTACGGGTAAGGCTGCCGAGACTCGTGAAATGAATCAGTTGTCAGGCGGCCAGAAGTCTTTGGTGGCCCTGGCCCTTATATTCGCCATTCAAAAGTGTGATCCTGCACCTTTCTATTTATTTGATGAAATCGACCAAGCATTGGATCCACAGATCAGAAAAGCTGTCGCGGAAATTCATTCTGCGTCTGTGAAAGACTGA

Transcript

BRAKERYMET00000034214

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93309	Structural maintenance of chromosomes protein 3 OS=Xenopus laevis OX=8355 GN=smc3 PE=1 SV=2
P97690	Structural maintenance of chromosomes protein 3 OS=Rattus norvegicus OX=10116 GN=Smc3 PE=1 SV=1
Q9CW03	Structural maintenance of chromosomes protein 3 OS=Mus musculus OX=10090 GN=Smc3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003578 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR024704 all species →	Family	Structural maintenance of chromosomes protein	Interproscan
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR041741 all species →	Domain	Structural maintenance of chromosomes 3, ABC domain, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43977 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0034990 all species →	Cellular Component	mitotic cohesin complex	Interproscan
GO:0061775 all species →	Molecular Function	cohesin loader activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06669	SMC3, CSPG6; structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)	-	Proteoglycans	ko00535	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.