Gene detail

Detailed information of BRAKERYMEP00000034287.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015768464.1, PREDICTED: homeobox protein slou-like isoform X1 [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q75W95	NK1 transcription factor-related protein 1 OS=Danio rerio OX=7955 GN=nkx1.2lb PE=2 SV=1
P15858	Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE=4 SV=1
P19601	Homeobox protein SAX-1 (Fragment) OS=Gallus gallus OX=9031 GN=SAX1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008774 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050394 all species →	Family	Homeobox NK-like transcription regulators	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24340 all species →	HOMEOBOX PROTEIN NKX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09309	NKX1; homeobox protein Nkx-1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.