Gene detail

Detailed information of BRAKERYMEP00000034553.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029195440.2, vinculin-like isoform X1 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000034553

ATGTCTGGCAAGTTGCTTTCATCCCTGGTTCAGACAAAGTCAATCGAGCTGGTTTTGGCGCCGATTGCTGCACAGGTGTCTCAACTGATCTTGCTTAATGAGGCAGCACAGAGAGATGGTATTCAATTGCCAGACCTGGTTTCCAATGCCCAGCAGATAAGACAGGCTGTTGATAGTCTTGTGTCGGCTGGACAGAGGCTGGTGACAGAAACGCCTGATGATGATTTGAGGACTGCAATGCCTCCAGCATGTGATGCAGTTAAAGATGCTGGAAATTGTTTGTTGATGGCAACTCACCAACTGAAGCAGCAGCCATTTTCTAACAAAGTTAGATACAACCTAGTTGACTCTGCAAGAAATATTTTGGAAGGAACTATGAAGGTATTGCTTGTTTATGATGAGGCAGAGGTTCGCAAGATCATCGCATCTGCTCGTAGGGTGATGGACCAACTTTATCTAGTAGAGGCAGCTACCTCCTCCAGAGAACTGGTGGTGAGATTCAAGGCTTTCACAGAGTCCCTCATGGCCTTAGCAAGTTTGTGCAACAAGAGACAACAAGAGCTCAGTAACCCACATCAGAGAGACAGGCTTGTTTCAGCAATGAGGATTTTAAAGAACTCCATAGGATTACTGGCATCATCTATGCAGACATATCTGAAAAATCCAACAAATTTACAAACAAAGGCAAGCTGTGACTATGTAGTTGGCCAAATCATGTTAGCTTGCACTGAAATTATAAACATTGTTCAAGCTCGAGGAGATTTGGACCAGAGTATTGAAGAACCAAGCTACACTGTTGTGACCTCAGAAAAGGCTCACAAGCAGCTTTCCCCTCACAGTAGACTGGGAACCAGCAATGAGCTTGACTCTTATCTGGATGCTATTGTGCACAGTAGTATGGGCGTGGCAAACAGTTGTGAAGGTGGAAGAAAAGAGAGGATTGTACAGGCTTGCCAAAATGTTCTGCGTATGAGAAATGAACTTGCTGAACTGCAGAAAGGCCTTCAAGAGAAGCCTTTGTCACAGAGAACAAGGCATGAACTTGACTTGGCTTCTGATCGTTTATCTGTTGAACTTAAGAAGCTTGACCGTCTTGTCTCTACAGCTGTGATTGATAATATAACCACTGTGTTTGCTGATGCTGAGCTACCTGTTCACAATATGATACAAGCAGCCACTTCACCGCCGTTGGATATGAGCATTCAGAGTCAAGAAGATGCAATGATCAGGTTGACAGGAAAAGCTGAAGAATTTCAGAAACATGCCGCTAGGTTATCGCAGGTGGCTCGGCAGTCTGCAGCAATATCAGCTGATGCAAGAAGAATAGAAGCTATCAATGGCACAGCCAGTGACATAGAAAACTTAGCTCCCAGACTGGTGTCAGCAGCTGTAAGGGTGCGACAGATACCCACAGATGCTGGATGCACAGAGCATCTAAGTCGATTGAGAAGAGATTGGGCAGCAAGGCTTCAGATTCTCACATCCCTGGTGGATGAAATCACAGACTTTAACGACTTTGTCTTGATGACTGATTTCAATGTTCAGAAGGACATCGCCCAAATTCAAGAAGCTTTAGTGTATCAAGAAGACATCGCAGTGGTGTCCCAGGTGTCACTCAGAATGCTTGGTCGAGCCAGAAGGGTTGCTGTGGTTACAAGGCGAGAGATGAATGCCACTGCTGATCCCATGTACAAGGGAAAGCTGCAGTCAGCCTGTGGAGAGCTGGAGTCGGCTCTGCCAGTCCTTGTCCAAAGTTTGGAAGGAACTCTGCTAAACACGGCAGATATTGAGCAACAAAACAAGCTTCGTGAGAATTGTAAAGTTCTGGGTGACAAGGTCAAGATAATCAAATCCGCCCTTAAACGGCCTGCTGGAGTTGGCATAGATTTAAGTGATTATGGCACGGATACAACAGGCACCAACGCTTTGGATCCAAAGGACAACATGCTGGATTTGTTTGAAATCTTAAGAGCGCGTCCTACAACACCAGTGAGTGACACTGTGTCCGTTGATGAACCAGATCTAGCAGAGCTTGGAAATGAACCTGTTAAGGCTTCCGAAACTTCTTTGGATTATCTTCCCAGCTCTGAGGAAaTCGAGCAAGAGCCGAAAGCTACACGTTCCAATTTACCGAAAGAGAAGCGGGACCCCTCACGGGATCCCTTACGGGACAAGGCTCGGAAAAGATCCCGTGGCCGTGATCAGATTGTTGATTCTGAGGATCTGCTGTTTAATTTTCTGGAAGATGACGAAATGAACAGAATCAACAAGAAAGCTTTGCTTGGAATAAGCGAAGAGCATTTTAACGAGTCGTCACTATCAGCAGGTGTTGTTCGCCCGATTAAACCTTCCCAGTCCTCTCGAGCGCCTGTCTCCAGACTATTGTATGCTGTGAAAGGGAGAGATTTTGACTTGGCCGAGAGAGAACTTAGGAAAGTGGAATCAAGAGCGTCTGCGTTAAGAACGCTTGCCAGCAGTTGCGCAGATAGAACACGAAACTTGGAAGGCGTCAGGCTTGTTCGAGTTTCCTCTGGGGAAATTGAAAAACTCACGCCTCTCATCGTACAAACAGCACGTGACTTTCAATCCAACCCACGTGACTTAGTGACTGTCGAACGCCTGCAGACGATTGGCCGAGAATGGGCTTCTAAGGTTCACGTGCTGTCTGGTGCTGTCGATAAAATTGTTCGGCCATGGTCAGCGACAGCCTCCAAACTGGCTTTAGCTGCTGCATCAGGGGATGCAGAGCAGTTGAGAAAACAGGTGGACAACGTGAACAGACATGTTCTTCGCCTCAGACAACTGGCTGTGGCGGCCAAAGCAGCTGCTGATGCTGAAGATTACGCTATGGATGCTGGGAATGAAGGGGAAGCACCTGCGCGTGACCCAGCCTCGCTTCAGCGAGTGGAGTTGGTTGGTGTGACGTCTGGAGAAGTCGAAAGAGTCACACCTCAGCTTATTGCAGCCGCTCAGGCGTTATCAAGAGACCCTACTGATACTTCAAACGTCGAGCGATTAGAACTTCAGAGGAGGGACTGGGCCTCCAAAGTCTTCAGTCTGATCTTTGCTGTCGATGACGTCACCGTTGGAACATCCGCGCCTGTGGAGCAACTGACGTCTGTTGCTTCGGCAGGAGACCAACATGCTTTACAGGAAAATTCCCGGATGTTAACGTCTTATTCACGAACTCTAAAAGAAATGGAAATTGGATCTACTGCTGGgtgCAATGATTCCAAAAAAGTAAGTTTAGCCGAGGCAACCGTGAATTCTGTGGAGAAACTAACCGCTGACCTTCAGGACACGGCTCGTTTGGTTTGCGAGATGGCATCACGGGAAAACAGGACACTTGAGCAGAGCCTGGCGTACATGGGGGTGGTAGAGAGGATGAATTTGCTTCAGAGGGAATGGGCCACTAAGGTCCATTTGCTGACAGCTCTCGTCGACGACCTGACAGCGGAAGCCTCCGCACCAGTTGATCGGCTCGCAGGCGCGGCACTGGCTGTGAGTAAAGCAGAACTTGGGGAAAGGATACAGCAGCAAAGCAACTTTGAGATGCAAGCTGACGAACTAAAGGCGCGTGTGGCTCGCGTCCGAACTCACGCGAGTAAAGCAGTGGAGAATTCTCGTCACACGAGTAAGGTCAGATACGTCCGCGTGACTGGTGACTTTATTGACAGACTGACACCTCAAGTCATTGCAGCGGCACGTGCCTTGGCAGACAATCCAGACCAACCCACTGTGGAACATTTCCAGATGCTAAGGCGTCAGTGGGCGTCTAAAGCACAACTACTGATGGCCACACTCGATGCACTCCCTGATGCGAACAGCGCCGCAGTGCAAGATGTATTTCAAGATTTATTGAGCATACCACATATGGAACCCGCGCAGAGCTTCGAATCCTTGACGGAAGAAGAAACCGTTGCTATCGCGGGCTCATCCCGCGGACGTCATCCGCCCATAACCCTCCCTTCTTATGACGACAATGTGCAGGCATACCCCTCCCCTTCGAAATGGTCTTCAACAGCTGTGGGACAGCCACCAGAGATAACCTCATACTTTGATGACTTGGCATTGAGTGAACTTGCTGCCCAACTACTGCAAGAGGAAACCGACAAATGGGAGGAAGAAAACAATTCAATCGTGAAAGTGGCCAAGGAAATGGCACAACAAATGATGCAGATCGCTAAGTTCGCTCGGGGAAGAAACAGACTTCAGAATAAAATGGACATGATTAATATGGCTAAAGCTATCGCCTCCAACGCCATGGTTATCCTTAAGTTTGCCCAGGATATCGCTGAACAATGTGTGGATGAACGAAGTAAAAGTGATCTATTGTATTACGCGGAATACCTACCAACCATTAGCACTCAGCTCAAGATTATATCATCTGTTAAAGCAGCGACTCCCTCCGACATTTCGGCAGATGCAATGCTTGTGAAAAACGCACAGAATCTTATGCAAGCTGTTGTGAAAACACTGAAAGCGGCAGAAGCTGCGTGTGTGAAGGGTCTCCGGCGACCCGAGAAGGATGCGTCCTCCGATCACACAGAAGCCGCTGACCTTGCATTTCAATGGCAAGAGAATCTTAAGAGGCAACGTGCGATCGAGGCTCTAACTGCATCACGAGATGAACTAGGCCTGCGCAAACGAGAGAAAAATCTCTCTACGCCTTCTTTGGTGGATATTGTTAATGTGTAG

Transcript

BRAKERYMET00000034553

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A3B6UES5	Vinculin OS=Oscarella pearsei OX=1940113 GN=VIN1 PE=1 SV=1
Q64727	Vinculin OS=Mus musculus OX=10090 GN=Vcl PE=1 SV=4
Q04615	Vinculin (Fragment) OS=Xenopus laevis OX=8355 GN=vcl PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003606 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01044 all species →	Vinculin	Vinculin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036723 all species →	Homologous_superfamily	Alpha-catenin/vinculin-like superfamily	Interproscan
IPR006077 all species →	Family	Vinculin/alpha-catenin	Interproscan
IPR000633 all species →	Conserved_site	Vinculin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18914 all species →	ALPHA CATENIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0008013 all species →	Molecular Function	beta-catenin binding	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000034553.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.