Gene detail

Detailed information of BRAKERYMEP00000034582.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3111255.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000034582

ATGGCTACAGAATCTAGATTTTTTGCTGCTGGAAGCTCAGAAAGTGAGTCCAGTGATAGTGATATTGAACAGCCAGTGGCTGCAAAACCCGCGGCTGTGGCAACAAAGTCTTTCGTCTTCAGTGATGATGAGGAAGACACAAAGAGAGTTGTGAGAAGCCAAAGAGATAAACGGTTTGAAGAGCTGACCAGCTCGATCAAACAGCTCAAGAATCACAAGAAAATCAAGGATATTTCCAAAGTCCTCACGGAATTTGAAAATCTAGGGAAAGCTTTCACCAAAGCAAAAGCTGTGGTTGATAAAGAGGGTATTCCACAGTTCTACATCCGCTGTTTAACAGAGTTGGAAGACTTTGTCAAAGAGAACTGGGAAGATGCAGAAGGTCGTAAGAAGTTAAGTAAAGGGAATGCAAGGGCTTTGGCTACACTAAGACAAAAGTTGCGAAAATACAACAGAGATTTTGAAGACGAAATAGCAAAATACCGAGAGaACCCTGTGCTGTCTGGTGAATCAGGCCGAGAGGATTCAGCTTcaggtgatgatgatgatgatgacgatgatgatgatgaggatgatttCCTGGGAGGAGCCAGTGCATTTCTCAAGAAGAAGATTTCAGACAAAAGCAAACCATCCAAGTCAGTTGAGGCTGCAaacgaagatgatgatgacgatgaggacAGCATTGATTGGGACAGTAGTGATGGCGAGTCTTCATCCAGTGACAGTGATATTGGTGGTGAAGGAGGTCCAATGCAACTTACTGCAAGCATGTTTATCAAGAAGGATAAAGGTCCAGaggacaaagtaaaacaaaaaagaaagatcaaagaCAAAAAGACAACTAAAATCCAAACCAGAGAAGGTGAAATTGATGAAGGTGGATGGACCGAAGTCAAAGGGAGCCACTTGACAGCTGCGGATAAAGCCAAGAAACTTTTCCCCAAGGACACAGAAATCACTCATCCAgttgttttgaagaaactgcATGAGATTCTCTCTGCCAGGGGCAAAAAGGGAACAGATCGCACAGAACAGATTGAATTCTTGAAGCAACTAAGGGTCATTTCTGATAGGGCACTGTTGGGTGTTGGCATGACAGTGAAACTTCTTTTCAACATAATTTCATCCATCTTCGACTACAATCCTAATGTGGCCACCTGCATGAAAGCAGAGATGTGGCAAGAATGTTTGAAGCAGATTGAAGAACTGATTGATATCCTGATTGCAAGTCAAGGCGAAGTGACTGTTGGTGAAAACATATTagaggaatttgaaaatgttgatAGTGTGGATCAACCTTACAAAGTTCGAGGATGTCCTCTGGTCACTATGGAGCGTATGGATGATGAATTCACCAAAATGCTTCAAGGCTGTGATTGCCACTCCACTGAATATGTGACAAGGCTCAGAGATGAAGAAAAAGTCTGCAAGCTCATTACAAAGTTGCAAGGTTACCTGGAAGTGAATGGCTCAAGATCAGAAATCTGCAGAATTTATTTGCAACACATTGAGCATCTTTATTACAAGGTGGATTCTGAAGACAGTGAAGAAGAAGCTAAAGAGTCAGATGCCGATAAGGATTCTGGTGAGGGAGGAAAGACAGAGAATGGTCCTCAAAAAGAGCTTCAAAACTCCTCTGAAAAGGTTGACAAGATGTGCAAGTTCATTTACTCACGTGACACATCGGACCGGATTCGCACAAGAGCTATGCTTTGCCATGTGTACCACCATGCATTGCATGATCGCTGGTTTGAGGCACGTGATCTGATGCTCATGTCTCATCTACAGGAAAGCATTCAGCATTCTGACATTCCAACTCAGATATTGTACAACAGGACAATGGTTCAACTTGGACTATGTGCTTTCAGACATGGTATGATCAAAGATGCACATAATGCTCTGCATGATGTTCAGTCCAGTGGAAGAGCTAAGGAACTTCTGGCCCAAGGTTTAATGCAACAAAGACAGTATGAGAGAACTCCAGAACAAGAGAAAATTGAGAAGAGAAGACAGGTACCATTTCATATGCACATAAACCTGGAGCTTTTGGAGTGTGTTTATTTAACTTCAGCAATGTTAATGGAGATCCCTTGGATGGCTGCTCATGCATATGATTACAGACCTCGCATATTAAGCAAGAGCTTCCACTACCAGTTACGACAGAGTGAAAAGCAAACTTTAGTCGGTCCTCCAGAAAGCATGCGTGAACATGTTGTAGCTGCTTCCAAAGCCATGAAGAAAGGAGACTGGAAACAATGCAAGGACTACATTTTGGCTGTTAAAGTTTGGAAATTGTTCCGTCAAACAGAACAGGTGCAAGAAATGTTGACAAGgaaaataCAAGAAGAAAGCCTGAGGACATATCTGTTTACATACAACAGTGTTTACGACTCATTGAGTCTGTTCACACTGGCTGAGATGTTTGATTTGCCTCCTGCTGTGGTACACAGCACCATCAGCAAAATGATTATCAATGAGGAGCTGCAGGCCTCCTGGGATGAACCGACTCAGACAGTTGTGATGCACCGAGGAGCCGAGCCTTCACTTCTCCAGAGCTTAGCTTTACAACTTGCTGATAAGGTTAGCACCTTGGTGGAAAACAATGAACGTATTTATGACACGAGGCATGGAGGGTTTGTTCAGTTCAAGGACAGACAAGGTCAAGGGCGTTATCGGCGTCAAAACCAACAGCATTTTGATCGACAAGACCGACCCGAAAAACAGGACAGACAGGAACGGTACAACTGGCAAGATAGATATGGCGGACGACAGCATGACAGGTCTTACCAGCAATAG

Transcript

BRAKERYMET00000034582

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1V4	Eukaryotic translation initiation factor 3 subunit C OS=Xenopus tropicalis OX=8364 GN=eif3c PE=2 SV=1
Q4QR58	Eukaryotic translation initiation factor 3 subunit C OS=Xenopus laevis OX=8355 GN=eif3c PE=2 SV=1
Q6PFQ2	Eukaryotic translation initiation factor 3 subunit C OS=Danio rerio OX=7955 GN=eif3c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001785 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05470 all species →	eIF-3c_N	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	Repeat	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR008905 all species →	Domain	Eukaryotic translation initiation factor 3 subunit C, N-terminal domain	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR027516 all species →	Family	Eukaryotic translation initiation factor 3 subunit C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13937 all species →	EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03252	EIF3C; translation initiation factor 3 subunit C	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.