Gene detail

Detailed information of BRAKERYMEP00000034930.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015760819.1, PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6-like [Acropora digitifera]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000034930

ATGTTCACAAAGAGTGCTTTTCAAGATTATCAAGTTGCAAAATCTCAGAAGTTGAGCAAGGTTACAGACTTGGCTAATGCTGATGCTTCAGAGGACGACAAGCTTAAGGCCATGATGAAGCAGTCTGGAGAGGACTGGGACCCTTCACAGTATGTAAAATGCCGTCGACCATATGCTCCAGGTGGGCCTGTTCCTCACAACTATGTATGTTACAGATGTGGAAAACCAGGGCACTTTATAAGAAACTGTCCAACTAATGGGGATAATAGATTTGATGTTCCCAAGGCAAAGCGTACAACTGGTATTCCTCGCACTTTCCTGGGCACAATAGAGAGTGCAGCATCACCTCCTGCTGGCAGATCATCACCTTCATTGCCTGaAGTGGATGTAAAAACCAAGGGAAAAGAAGCTTCTAACAAGAAAGTTCCATCAGAACTGAAATGCCCAATGTGCAGCAACTTACTGACAGATGCTGTGCTCATTCCTTGCTGTGGAACTAGTTACTGTGATGACTGTATTAGAAACTATCTCTTAGAAAATGAGCAGACTTGTCCATCTTGTGGTGCAGAGAACGTTTCACCTGATTCACTAGTCATAAACAAACAGCTCAGACAGGCTGTGAATACCTTCAAAAATGCAAGACCCGATAGTCCTTGTATAAGCACTCTCCTAAACAGTACACCAACTGCAACCAACATCACGCAGGCACCAACAAAGGTTGCTACAGACAGTATGTCCAGTAATACAGCTGCTCCAGAGATTAAACCACTTGAAAGTACGGCGACTAACTTTAGATCTCATGGAACGGGTTTTCGTTATGATTTAGTCGTAAAGGAGAGAAACGAGACAGATAACGGGACAAAAGAAGGTTCACCAAAGCCTCCACAGCCTGTCAAACCTGTCACAGGCGGacctcagccaatcagagtccACCATCGTGAGGGTCCAGCACAAGGTATTGGCGTTAAACAAGATGGGGTCCCGTTTGACCCTCGCAGAAGACAAGGTGACTTCTTGTTGAGAGGACAACCAAGAGTGCCTGAAGTACGCCTTGGGCTCTCTGAGCCTATCATACCGCATGGACTGCCCCCAGAACACATCCCTAGGGTTCCTGCTATCAGGCCTAGCATAACTAGCCACACTCAGCTTGGTCCTCGCATGGGTGTTCCTGGTTACGTGCCCAGTATCCGCCCCACTGTCCCGACAGCCATACCTCACATACCACCTGTCCCCACCCTGGTGAGAGGACCTGTACCCCACCACCCAGCAGCGTTTGGAGCACCAATATTCGACCCACTCCGCTCTGTCGATGTGCCCAGGGCACTCACACCTCCAATGAGTGAACGTGAATTCtacaaaatgcaaaagaaaCTAAAATCACGAGGCAAGAGGAAGCGAGAACATGAACGTGCGTCATCTAATCGACCAAGAAAAGAGCTAAAAAAGGAACCAAGAAAAGACGCAAAGAACGATCGAAACGTTTTTGACTTTGATGATGAACTCTCTGCATACCGAAAGCTTCAGAAAAGCCGCCAACGTCCTTCTGTTACTCCGTCACGTTCTTGGTCACGCTCTCTATCACGGTCACGGTCACGGTCACACTCTTTTTCACCTTCGAGGTCACGGTCACGTTCGCCATCACGCTCGTCACCAAGCCCCGCTCGATCACCTACTCCCGAGGGCTGGGATGAGTCACGTTCTCCTTCCCCTGCATCGTCCCGCGATCACTATACTAGTGCGTCTGCagaggagaagaaaaagaagcacaagaaaagaaagaaggagcAGAAAAGTAAAGATCGCAAGAAACAGAAAAGCGGcttgcaaaataataatgaacccACTGCAGAACAGAATGAGCAACCTGTTGCTGACAAGATTGAAGAGAAAAGCTCGGAGAAGAAAAAACACAAACGTCGTGATAAGGAGAAAAGTGATGGTAAAGAAATGAAAGAGGATAAAGGAAAAGTTAAGAACTTCAAGGGCGAAGAATTGAAGAAGGAAATTAAGGAGAACGAGAAAGTGAAAGATAAGGAAAAAGTGAACGAAAAGGAGAAAGGgaaagagaaggagaaagaaaaagggaaagagaaagaaaaagataaaggGGAAGTGAAGGAGAAACGCAAAGACAACAAAGAGACAGTGAAAGATGCAGACAGGGAGGAAGTGAAAGGCAaagataaagagaaaagaaaaagaaaggataaGGAAAAGAAGGgaagtgaaaaggaaaaagagaaaaaggttaaagagaaaaagaagaagaaggaaaaagctAAGAAGGACGAGACATCGTCTGGAAAGAAGcgtaaaaacaagaagaaacacaagaaacacaaaagacataaaaaagaaaaatccaaggAAGGAAAAGGTGAAGGGGAAGAGGATACGAGTGATGGTAAGGTAAAGGACAGTGAAAACCAAGGCGTGTCTTCAGAGGCTGGAAACCCTGAAGGGAAAAGTAGTACAGATGATGACAGGGAAGAGCGTGATGACACACAAGACAGTGAAGATGATGAAACACAGCAGACTGACAGTACAGAGGAACTAGAAGGGAATAGCGGGGAAGAAAAGATGAAAGTTAAACAAAgcgaaaaggaagaaaagctgCGAACCATTGAAAGTGATGAAGATGATTTCAAAGGAAGCGAAACTGACCAGGAAAAGCTGCCAGGGAAAGAGAGTGACGAGGAAAAGGAACCAGTGCCCCAGGGCAAGCTACTGGGAAAAACGAAGTGA

Transcript

BRAKERYMET00000034930

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z6E9	E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1
P97868	E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5
P35728	Protein MPE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPE1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003950 (this species only)
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564 all species →	U-box	U-box domain	Domain	Interproscan
PF13696 all species →	zf-CCHC_2	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR025829 all species →	Domain	Zinc knuckle CX2CX3GHX4C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439 all species →	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000034930.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.