Gene detail

Detailed information of BRAKERYMEP00000035195.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029203547.2, SMC5-SMC6 complex localization factor protein 1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000035195

atggcggcaagaTTGCGGAAAGAGAGGAAAAGATACCGCATTTTACTGTCGTCTTTTCACAGCGAAGAGAAAGCAAAGCTGTCGCTGTCGATCCAAAAACTTGGAGGAACATATCTTGATACACCGACGTTTGTGAGAAGTTGCTCGCATGTGATTTGCGGAAAGCCGAGTCGAGGTGAAAAATTTCTCTGTGGCTGTGCGTCAGGAAAGTGGATTTTAAAGAAGGAGTTCATAACAGAAAGCATCAAGGCTGGAAAGTGGCTTAATGAAGAATCTTATCAATGGAATAAAGAAAGCAATGTTGCAGGAGTTTCTGCTGCTCATTTGTCTGCACCTGCTCGCTGGAGGAAAATTCTACAAACAAAGAGAGGACCTTTTGAGGGATGGAAGGTTCTGGTAGCTGTTGCAGATGCCAAGAAACGAGCAGCATACAAAAGGTTGCTGGAGGAAGGATGTGCTGTTCTTGTGAATGGTAAACCCCCATACCAATCCAGTCTTGCTTCCAAGTTGACCCATGTATTTGTGGACACAGCTCTTGAAGATGATGTTAAAGTTCTTCAGAATGCTGGAGTCCAGTGTCTTTCTCCTGATTACATTCCAGAATTTATACTGCAGGATCCTGTGCCTCCCCCTGTGGTATTTCTCATTACATCATACAAATCACCGGTGAGTCAACCAGCATTTGGAAGACTTCAAAGGACTGCTGGCAGACTGAAACATACTCCTGTCTTGGGAAGTGATGCTATGTTGGTCAGAAGTGGAAATGAAAATCCCTTGTCTTCAATATTAACTGCCAAAAAGACAAAAGCACCTTCTAACTGTTCATATATCTCTGCATCTCcaagcaagaaacaaaaacagGTGTGCACTGGTGCGTTTCCAGAGTATGTTATGAACTCAATAGATGGTTATTTGGAGGAATCTCATCACTCCACCGTGTTGGACGTTGTGGGGTCCTCCTTGTCTTTCAGGAGGTACCCCCCTGAGCAACTGCTCAGGACAATTATCGACAACGCGCTGAAATCGCCGTCTCTTGTCCAGGCAACCAAAGCGTTCGTATTACTTCAGCGGCTGCTCGTATTTCATCCGCCATCTGGCAACACCTCTCTGTACCAGTCCACACTCGACCTACATGCTAGCGCCGAAAGGACTGCGGTGGGGGCATCTGCTAACGCTCGTGAATGGGAGTTCCTTAAAACACTGTGCAGtAAAAGCGACGAGAACAGCCTGCTTGTTCTACGATTTGTTCTTACTTTACTTGAGAAGGACTTCCATGAACGCATAGGCGCTGCGGGTGTGTTGTCAGCCAGTGAAAATCTGAACAGTCTCAAGCAGTCTTTACTGTGGCGAATGTTTTGGCCCGGATCATCAGCAGTATCCTTCAACCCACGTTTGCGTGAACTGTTCGGAATCTCTTGGAGTTCATCGTATCGCGCATGTGATGATCCAGTAGTGACTCCCGTATTGCTTGCTTTACAAAGTATCGTAACGATGGTGTCCCAAATCCACATCCTGTCCGACCACCACTCAATGAAGTGTACCGAAGAAACTCTCGGCACCAGGTTGAGTGAGCGCTCGCGGACCTTTGTGAGCGAAGCAGCCTACGGTGGATGGAATCGCAGGGGGCCTTGTCTCAAGCGGTTTCTGGAAACGTGTGGATCCATGTGGCTAAAGATGCATGTAACTGACATGCTCCTAGGCAACTACTCTGACTGTGTTGTGCCTCTGGAAAGGCGTTCTTTCAAAGTCAAGACTTTATCCCTGGACAAAATCgttttttactattttttattGGTACCGTCTACTGCTGCTGCATCACCTGCCGCAAAAGGCGCTCCGGGAGCACCACTCCGAGACATTAGattGTCGTTATTAGAACGGGGATTGATCAGCAGGAACTATATTCTACCCATTACTAATGTGATAAGGGGCGAGACAAAGCTACACATCGCTTGTATAAAAAATGACGTCGTAAAAGTCAAGCAGCTTTTGGCAGCAGGAGCAGACGCTAACAGCACTGATTATGCGGGGTGGACGCCCCTGCACGAGGCCTGTAATCATGGAAACGTGGAATGTGTGCAAGAACTTTTGAAGGCCAGGAAGCCGGTCTTTGAAATGAACTCTGAAGATGATCCGTGCCATGTACTCAATTTGGTATCAGCTCCTAAGTGTGGCACGACTCCATTGCATGATGCCGCGGGTAACAATCATTTGAAAGTGATCGAGTTACTTGTCACTGCCGGAGGCTTACCTTTGCTCCAGGCCAAAAACGACCGCGGCCAAAAACCCTTTGACGTGACCAGTGACACGAAGGTTAAAGATTTCCTACAGACCATGGAAAGCAAAAGCTCAGACTTGTTCCGTACTTCAACCGAAGCCATTGATCAAAGAGTGCTGAAACACACATCTGATGAGTACACATTGATATTGGCTCATTTAGTGCAGTCGTACTTCCGTTTGAGCAAGGGCGCTGCTGACAACTGGACCAACTTCACCACACATGTCGATGATTTGGAGAGTCATGTGAAGAGGATAACAGGAGGCACACGTTTGCCAACCCTTATAAGAATGAGACTCGCTGCTATGAGAATGTTGCAAGATTAG

Transcript

BRAKERYMET00000035195

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZQF0	DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV=2
Q8R3P9	SMC5-SMC6 complex localization factor protein 1 OS=Mus musculus OX=10090 GN=Slf1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003938 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF16770 all species →	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049936 all species →	Domain	DNA topoisomerase 2-binding protein 1, eighth BRCT domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR042479 all species →	Family	SMC5-SMC6 complex localization factor protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46677 all species →	SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan
GO:1990166 all species →	Biological Process	protein localization to site of double-strand break	Interproscan
GO:2000781 all species →	Biological Process	positive regulation of double-strand break repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000035195.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.