Gene detail

Detailed information of BRAKERYMEP00000035272.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029186266.2, 3'-5' ssDNA/RNA exonuclease TatD-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2VG45	3'-5' ssDNA/RNA exonuclease TatD OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=tatD PE=3 SV=1
D0Z9R0	3'-5' ssDNA/RNA exonuclease TatD OS=Edwardsiella piscicida OX=1263550 GN=tatD PE=3 SV=1
D4ICL5	3'-5' ssDNA/RNA exonuclease TatD OS=Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3) OX=716540 GN=tatD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005846 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026 all species →	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR001130 all species →	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR050891 all species →	Family	TatD-type Metallo-dependent Hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10060 all species →	TATD FAMILY DEOXYRIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008310 all species →	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000035272.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.