Genomic Location: BLFK01001047.1:795818...838308
NR annotation: XP_015766182.1, PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000035637 |
| Transcript |
| BRAKERYMET00000035637 |
| Protein |
| BRAKERYMEP00000035637.1 |
| UniProt accession | Description |
|---|---|
| P41252 | Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=IARS1 PE=1 SV=2 |
| Q8BU30 | Isoleucine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Iars1 PE=1 SV=2 |
| Q21926 | Isoleucine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=iars-1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002531 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08264 all species → | Anticodon_1 | Anticodon-binding domain of tRNA ligase | Domain | Interproscan |
| PF19302 all species → | DUF5915 | Domain of unknown function (DUF5915) | Domain | Interproscan |
| PF00133 all species → | tRNA-synt_1 | tRNA synthetases class I (I, L, M and V) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009080 all species → | Homologous_superfamily | Aminoacyl-tRNA synthetase, class Ia, anticodon-binding | Interproscan |
| IPR023586 all species → | Family | Isoleucine-tRNA ligase, type 2 | Interproscan |
| IPR001412 all species → | Conserved_site | Aminoacyl-tRNA synthetase, class I, conserved site | Interproscan |
| IPR014729 all species → | Homologous_superfamily | Rossmann-like alpha/beta/alpha sandwich fold | Interproscan |
| IPR009008 all species → | Homologous_superfamily | Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | Interproscan |
| IPR002301 all species → | Family | Isoleucine-tRNA ligase | Interproscan |
| IPR013155 all species → | Domain | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding | Interproscan |
| IPR033709 all species → | Domain | Isoleucyl tRNA synthetase type 2, anticodon-binding domain | Interproscan |
| IPR002300 all species → | Domain | Aminoacyl-tRNA synthetase, class Ia | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42780 all species → | SOLEUCYL-TRNA SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| GO:0004812 all species → | Molecular Function | aminoacyl-tRNA ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006418 all species → | Biological Process | tRNA aminoacylation for protein translation | Interproscan |
| GO:0004822 all species → | Molecular Function | isoleucine-tRNA ligase activity | Interproscan |
| GO:0002161 all species → | Molecular Function | aminoacyl-tRNA editing activity | Interproscan |
| GO:0006428 all species → | Biological Process | isoleucyl-tRNA aminoacylation | Interproscan |
| GO:0000049 all species → | Molecular Function | tRNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01870 | IARS, ileS; isoleucyl-tRNA synthetase | EC:6.1.1.5 | Transfer RNA biogenesis | ko03016 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
