Gene detail

Detailed information of BRAKERYMEP00000036067.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015770382.1, PREDICTED: nuclear pore complex protein Nup54-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BTS4	Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1
Q7Z3B4	Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2
P70582	Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006758 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18437 all species →	Nup54_C	Nup54 C-terminal interacting domain	Domain	Interproscan
PF13874 all species →	Nup54	Nucleoporin complex subunit 54	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024864 all species →	Family	Nucleoporin Nup54/Nup57/Nup44	Interproscan
IPR040985 all species →	Domain	Nup54, C-terminal interacting domain	Interproscan
IPR025712 all species →	Domain	Nucleoporin Nup54, alpha-helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13000 all species →	NUCLEOPORIN P54	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0006999 all species →	Biological Process	nuclear pore organization	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0036228 all species →	Biological Process	protein localization to nuclear inner membrane	Interproscan
GO:0044613 all species →	Cellular Component	nuclear pore central transport channel	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000036067.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.