Gene detail

Detailed information of BRAKERYMEP00000036624.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029182862.2, uncharacterized protein LOC114950872 isoform X2 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000036624

ATGCTACACGAGGGAACAGCCGTAGTTACATTCGAAAAATCGGAGGTTGTCCATTCTGTTATGAAAAAGCGGCAAGAAATAGACGGCTGTGTGTTGACTCTGGAGCCGTTTCACCCACCATTTTCTCATCAGAGAAGTCGAAATGGTGGTGGTGAAGTCTATTGTGTGCGAATGCTACACGAGGGAACAGCCGTAGTTACATTCGAAAAATCGGAGGTTGTCCAATCTGTTATGAAAAAGCGGCAAGAAATAGACGGCTGTGTGTTGACTCTGGAGCCGTTTCACCCACCATTTTCTCATCAGGTGTTTGGAAGGGTCTCTGGCCGCCTGAATTGTAATAACCAGGGATTAAGCTCTTCAACAATAAACAGCATCCTTCGTACAGTCGTGGACGAGATGGATGTCGGTTGCAAAGAAATATTGGATGGGTTTGTTGTGTCAGCTGGCACCTTAGAGCAACTGAGGGTAGTAAACAGCACTCTGATGATCATGCTAGATGAAAATAGATCAAAGAGGACTACCCTTGCAGCAGACTTTGGACAAACACGGGCTTCGACCAACTCCAAGTCAAGTCCACAATCTTTCCCAAAGAATGTCCAAGCAACAGGGAATCGGTCAAAACGTTACCCAATGAAGACCGAGGAACGCTTAAAACGGTTATCAGCGAATGGTGAGACAAATGTAAATCAAAAAAGCTGTGAAAATGGTAACGGTGAACCCGTTTTTGTGGACAAAAGTCCATTCTTTAAAACGAGGACTGAAGCAAACAGTCCTACCACATTACCGCCAGAAAAGAGCCAGCGTGGGTGGAATGAAGGAAGCAAAATAACCCATAGTAGCAACGCTACCGGTAACACTGGTTCCAAAGCCGTTTTCTCTGTGTTTGAGACTAGGCCCGATTCAGTCGGTGGTGGTTCTATGCGCCCGGTTTTACAAGAAAAGCAAGTTGTTAAGAGCAATTATGAAACTCAGAGTGGGGGAAAAAACCAGGAAAGTGCAGAAAGAGAACAACCTTGTGATAATGAGTCAGTTTATAAGGGCCTCGAGAAAGGGACGTTCAATAAGATTACCCCAGAGATTCTTAATTCTACCCCACAGGAATGTAAATCAAGTGACCACTGTGAGTTGCATTGCAAGTCAAAATTGTTGGATAGAGACAAGAAGAGAGGCAAATCCAACATCTGCCTATCAAAATCAAACGAAACGATTGCTCAAAAGCCTATGGAAGCAGCAGCAAGTGAAGTTGAATCTTCAGAGAATAAAAGGGGGGAACCCGAGAATGACATTGGCGTAGAAAACTTTTATAAGTCTGTTACCTCGACTGGTGTCACGGAAAAGCAAAATGTGACGGGTAATTATGAAACCCCGAGGGGGAAAAGAAACCAGGAAAgtgcagaaagaaaacaaccttGTGATGATGAGTCAGTTTATAAGGACCTCGAGAAAGGGACGTTTAATAAGGTTACCCCAGAGAGTCTTAACTCTACCCCACAGGCATGCCAATCGAATGACCACTGTGAGTTGCATTGCAAGTCAAAGTTGTTGGCTAGATACAAGACGAGAGGCAAATCCAACATCTGCCTATCAAAATCAAACGAAACGCTTGCTCAAAAGGCTTTGGAAGAAGCAGCAAGTGAAGTTGAAGCTTCAGGGAATGAAAGAAGGGAACCCAAGAACGATGTTGGCATGGAAAACTTTCGTGAGTTTGTTACCTCGACTGGTGTGACGGTCACTTTGCTCAAAGGAGACATTAGCAGCCAAAATGTGGACGTTATCCTTTGTCCAGCTAACGCAACGCTTTCTTATGATGAGGGATTGCCGAAGATGATTTTTGAGAAAGGGGGTCAAGTAGTAAAGGAAGAGTGTCTCAGCAGAATTAACGATGGGGTTGATGTGAAAGAAGGCAAGACATTTATCACCTCTTCTGGTGAGTTACCCGCCCAAGCGATCCTTCATGCCTTCTTCCCATCTTGGCCCACACCACCCTCGGCGgaggaaagccctgggaacgaagttgggAAAGACGAAAaacaagaggaaaagaaaataaagcgcTGTATCCATCGTTGCTTGAAGGATGGACTTGTGTTGTCCTCTGGGCACAGAATGAAGTCAATTGCTATTCCTCCCCTTGGACAAGATTGGAATAATATCCCGGTCGCAGTTTCGGCAGAAGTGATAACCCGTGTTGTTGTAGGATTTAGTAGGGATATCGGTCCAATGCACTGTGGAATTAAAGATGTCCGTATAGTTTGCGAAGATGACAAAACTCTCGATGCCTTTGTTACAAGTTTTACGTCGTTTTCTCTTTGTGATGAAactccttttttcaagagtgtTCACTCGAAGAAGCACTCTAGAAAAGTAGTGACACTTGAAAACAAAGGTGAAAGAAATAATTCCTCACTACCAGAAGAAAACTCTGAGGAAAAAACTCAGAAGAACATTGCAACTTCCTCCGAATCTACTACCGCTGGTGCGATTAGCACTGAAGAACTAGAAGTTACACATTCAGTCCCGCTTGAAAGAAGAGGAAGCGGGACGACGAAAGCTGGCATTCCTGCTATAAGTGACATTTCCTGCTGTCATTTGAGTAAAACACAGCACGAGAATCAAGGCTACCGGGATTCCAATAAtggtgaaaacaaaatgaacgcACAGGTGAGTTTCGAGAGAAAGGTTTGTGAGAAGACAATTTCTTTCGTTTCAAGTGGTTCAGTGGAGCGCACTGAAATTGGTATGATGAATACATTTGAGATCCTGGAAGACGCAGTTGAACTTGCAGAAGGCACATTGGAATACAAGGTCGTTGAAGATAAGTTACCAAAGGCTGAAAATCTGAGGAGAGGCGGGTTAATGAGTAGTGCCTCACAAATGGACCAGgaagaaaaaatgacaacaagTTCCGAACTTGAAGACGACAAAATGGTGGCTGAAATTACAAAACAGCGCACACGTGTTATTCAGCGGCCTAAAatgaaggaatgtttatttcCGAAACAAGATACCATATTTGGTGACACAAGTAACCGGGGCATATTAAACAATGACATGCGTCAGTCCCCATCTGCTTCAAGTGATCAGGGCAAATTGGTTCCCTCTACTCGCACTAAAAACAGTGATATTTTCATTACGTCTCCCACTATCGAGCATCTCTTAACTGCAGACCTTTGTCTCGGGCTTCAAGGCTTGCAACTTTCTCACGAGAAGGAACTAGGCGATCGCTTGCACAAGAATGGAAGCATGGGGGAAATGAATGACAGGGAAAGAACGAGTCCTGACAGCCTTATCAGCTTGGGAGGTGTGGAGGAAACACTGTCTTCCGGCGGAGGATTTGGAATTACTGACGAAGCTCTGCCTTTTGGAAAAACAATTGACAAAAGAGGATCCGGAGCAAATGACTCTCGCAACAAGGAGAAGCCCTGTCCATCCAAAGGACATCCTGGTAAACCAGAAAAGAGACAAGGAATATCCGAACCACAGGAAAAAGAAGAGCATGATGAAGCAAGGAAGAAGGAATACAGGCTGGGATATCCATGTGCTGGAAATTACTTTCTGGCGAGCAAATCGAATGCGCCAAAGGAAGAAGTCTCGATTTTGTGTGCCCTATGTCAGGACTCAGTCGACCACCCAGAACTCACGGATCCAAACGTTTGTAAGAAACACAAATTTTGCGAGGATTGCTTAATCAAAGCCTTTGCCAACAGTGCTTACTGCCCTGCTTGTATGGATACGACTGGATTGATAACCATTGAGAAGGAAAGAGTTGAGGAAAATCATGCATTTCAATCAGAGAGATCGACGACGAATTTTCAACAAAAAGAGAACGAAGTAGATCACGGGACAGCTATTCCGGCTCCCGACGTTCAAGGTAACCAGCCTCCGGGACAAATGGTGTGGAAAAAGTTTGACAAAAGTCTTCCAGGATTTGAGGGATCTGGTACAATCGCTGTGTCGTTTAATTTCTACGGTGGTATTCAGGGCTCGGATCATCCAAACCCTGGTGGTTCATACAGGGGGACAACATGTAACGCTTATATCCccgaaacaaaagaaggaaaatatatttttaagatGCTGCGAAAAGCCTTTGACGCTCGTTTGGTTTTCACTGTTTCAAGTTCTGATTCCGATGGCACCGGATGTGTTGCATTAAATGGTATCGAACTGAAGACGTCATTTGAAAGGGATTCAAGGTAA

Transcript

BRAKERYMET00000036624

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TDB6	E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens OX=9606 GN=DTX3L PE=1 SV=1
Q926Y8	Macro domain-containing protein lin2902 OS=Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262) OX=272626 GN=lin2902 PE=3 SV=1
Q8Y3S3	Macro domain-containing protein lmo2759 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=lmo2759 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011038 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR039398 all species →	Family	Deltex family	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622 all species →	DELTEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000036624.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.