Gene detail

Detailed information of BRAKERYMEP00000036805.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029189732.2, uncharacterized protein LOC114956706 isoform X2 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000036805

ATGGATGATGGTTCAGAGCCTCAGAAAGAGGATCTTGTTCTAACAGACACTGCTCTAATTGATTCAGCTAATTCACAGATCAGTGAAACACCTACAGCTGCTGACTCAACTTTGTCGCAGAGTGTGACCAATGAACACGTCTTTCAGTTGACTGTGAATTGTGGTACTGAGGAAAAAGGGGATTCTGGCAACACTGAAAATATCAGCATGGAATTCGTCCCTGAGAATACAAAAGATTTGTACCCAGTCGAGAGACAAGAAGCAGTTCCAGATACTGATCCTGTTAAGGCAGATACAGCAATGGAAGAATCACCAGAAACTGCTACCACATCAGATTTTACAGAGACTGCTACAGCCACTTCCATTTCCAGTGCACCCATCTCTTTCAATGACAAAATTGAGGTGAATACACAAAATGTGGATGCAGAAGAGAAACCAGTAaaatttggaaagatttctgaTCCTCATGCATTATGTTGCTGTGAATTCTGTGGTGGTCCTGTGAAACGTCGGCGTTTTTGTTCTCCTCTCAAAAAGTTCTGTTCAAAAGGCTGTTCTCGAAGCTCTAGAAAGGCTCAGAAGAAGGAAATTGAAGATATAATCAATGGGCAAGACTCTGATCATGATGGCAGCTcttatacatgtactgtaacagGAAGTGAAGGGGAGGCATCACATAAGGTAACATGGAGTGATTACATGGAGGCTGCCCTCAGCAAAGCTGCCCCTGATTGCTGTTTCAAACATACAACAACAGACGTTCCAGGCTTAAAACCAGGAATGAAACTAGAAGCTGTTGACAGGAACAATCCTCCATCATTCTGCGTTGCAACGGTGATACAACAAGTCGGGCACAGGGTGCGCATTCGGTACGATGGCTTCGGAAAGGATGGCAGCAATGACTGCTGGTGTAATTTTCAAGCTGAGGAACTTCATCCAATAGGATGGTGCGCCGAGAATGGGTATCCCCTGCAACCACCAAAAGGCATTAACAGCACTCTTGAGGACTGGAGGACATTCTTAACACAAACACTGACCGGAGCACTAGCTGCACCCCGTGACTTGTTCAGAAAGACTCAAGAACACTTTCAGCCACGTGTGCATGGATTTGAAACTGGCATGAAGCTGGAGGTAGTCCACCCTCTGAAGCCGTCAGTCATCTGCCCAGCAACAGTCATCAAGAGTCTGGGCCCCTACTACTTTGCCATCACCACCGACTACCAGGAGGATATGCCTTCAGTCACGTTCTGTTGCCACAGTGATTCACCTGGCATTTTCCCACCAGGATGGTGTTCAAGGCATCAAGTTGAGCTTGCTGTGCCCGCAGACCACACAAAGAAGACATTTGCATGGGACAAGTATTTGGCACTTTGCCGGGCACCATTTGCTCCAGCACATTTGTTTAGAAAAATGAAGGCTCATAAATTCAAACCTGGAATGAAAGTGGAAGCTGTTGACTTGGAGCAGCCTCAGATCATCCATGTTGCTACCATAATGAACATCATGGGACGAATGCTTCAGCTCTTTTTTGACGGACGACAAAAATTCCAGTTTGTGGATTTTGAATCACCGGACATTTATCCCATTGGTTGGTGTAAAAGAACAGGCCACTCACTTCTGTCACCATTTGGATCAAttccATCAGATTCATTAAGCAAAGTTGACAAAGATGACAAGTCAGCCGGGGAAGAAAGTGACATTAGTGATGACGATACAGGTTCGGAGCGCTTCTATCACAACAAGAACCAGATTTTCTTCAACAAGAGCTGTTGTTACGGGCCCTTGTTGGACCCTGACAAGGTGTCACAGCTGCCCGAGGCCACCCCTCCCGGGAAAGTCAGCAGTGTCATACGCACAGGACTGGAGATGGTAGCCAAGGCTGCATTTGATCCAGAAAAAGTTATCGATCTGATGCAAGAGGGCTGCGGGGTCAGAGTTGTGGTCAAACACAAAGGCAAGATCCTGAAGAAGGCTATCTCTCGCGTGGACTCGAGGCCAAAGCTGGAGCGCTATCTGAAGAGGTTTTGTCGGCGACTCATCTGTTGCGAGTTCTTCTTGAGCCTGAAGCCAGTGCCGACACCATGTCCTGACCAGTGTCAGGCCGATGATCAAGGGAATTTGCAAGGTCCCAAGGGTGTCAAGGCTAAGAGATCACGCGAGTACTTTGAAGTCAAGCATCTTGGagtggagaaaaagaaaagaggccgGAAACGGAAGTCAGAGTACCTTCTTCCGGGGGAGCCAAACAGTATCGTTACCAGACCCCTGGTGGATAATGGTATATCGATGCCAGGGGCGTCCTTCAGTGTAGTTGAGGGGCAAACGATTGCTTCTTCGGTGACCACCGTTGCACCTGTTCAGAATGGCGCCATCGTCACTCAAACGCAAGGGGCACCCGTAGCCTCTCCCCCGGGAGTTACCCCTGGGATACCTTTGGCGCCAGTTACGCTAGGAAACCCGGGATTTCAAGCTCCTGCTAACGGGTCAACACCTCGCTCAACCAACCCGGTAAAAGCCATTCCCATGCTTGCGCCCCAGGGAAAACTTCCCATGTCTCAATCCCACCGGGCTCCTGTACCGATCAACGCTTTACCAGGGGGGAAACCAGTCATGAAAGAGGGTGTGCAGCCTCATAATCCACCCAGTGCGTCCAATATTACATTGACGGATGGTTCCAGTCGCATTGTAACCAATGTATCTAGTCAGAGATTTGAAACCAGTGCTACAAGCTCCGGTACCACTATCACATTTGGCCGAGCCCCACCGAACGTAACAATATCTAACTGCGTTCCTCCACCGCTGACCAAGATAGCCACCGAGGGTAGAggcagtcacgtgacaaccacaGCCAACGTGACGGTTGAACAGTCGAACCAGCTTGCAATTCACGCTGTGTCCGCAGTCCAGACGGCCAGCATCTCTTCGGCTCCACCGCCTTACCCTTCTGGCTCTTCGCACGCACCTCCGATGTCAAGGCCTTCATATAGCACGGTCACTGCTGGACAAATCCCCGTGGGCACTGGGTACAGGCCAGCGACCAGTCCTCCGGTGTATCCTCGACAAGTGTTGAGTGCGAGTCACGGGGGAGTGATTCGCCATCCCGGAGTTCATCCGAATCCCCCGGGGAACCCGTCGGCGATGCAAGTCAAACCCAACAGCGGAACACCTCCGCCCCCTCCTCCGCTGGTTTCTAATCCTCGCTTATCCCTACAGGGGGTACGCCCACAGGGAATGTACGTCCCAGCTCAAAGTAGCAATCCTACGTCTTTGTCCCAGCCTCGACCAGCACTGCCTTCCCACCCAGCATCATATGGCTCCTTACCGGTCAGAACGGGGGTAGTAAACCATCACCCTCAAGGAAATGTGCCACCTCCTCTGAGTAGCTCGTCTAGCGCTCCAAGCGCACATCCTCAACCTAGTGCAGGAGAGAGGGGACTTTCCCAGCCTGGGGCCCCTCCCATGTCTCAAAGGCCCATCATGCCTAACTACCACGGAATCCCACGCTCGATGAATCTGCCGAGGAATGCACCTCCTTCTATAAGGTTCTCAAATGTCAGGACTCCCCTTGGGGGTGGATTCGGTCGGCAACTTCCTCCACCAATGCGTCCGCAGGGAGCTGCCCCAGGGACACTGCAGCAGAGCTTTAAGCTGCGCTTCACAGTTCCCACAGTGTCTGGCAGCGCAGTACAACAGCGGAACATTGATTCCAAGCCTGTCACGTTCGTGGACTCGACCTTAGTGCCGAAATCTCGAGTGGGGCCAACGCCGATTAAACCCAAGACGTCTATCGAACATCTACAGGCGCTGACAAATGCCACAAATCAAGGCGCGATTAAAGAGGACCCCAAGGTTAAAGAAGAACAAGCCAAGGTGACCGAGGAAGAAGGAGAAGACGCCGAAATTGAAGAGAAGTCGGGATCGCCTCCGAAGAGGAATCTATGGTGGttgaaaaagaagagaagaaagcgCACGCGACTAACTTACATCAAAACGAAGTACCGTCGGAAAGATGACGAAGTTGCACCGAGTACTTCCGAAGTTGCTCCAATGGAGATGGAGGTGGAAGACGACCCTGAACTTGACTTGGACGATAGTCTTCCGAATGTTTCTCCAGGGGAAAGGCCGAAGCGAGGCCGACCACCGAAGGGTGTCGCTTTCCGATTCAAGGCCGAGAGTTTCTCGAACAGTGATCCCGACTGGGACGAGACCGAGGAACGGAGACGGGTAAAACCTGTTGTCAAGAAGAAAAAGGGACGAGTCAAGAAAGAGTCCTCCGAAGTTTCGTCACCGAAACTCAAGTCTCCAAGCCTTGAAGGTCCATCGCAAATCCCAGGCTTTTCCAGTGTGAATATGGCGCGGGAGGCTGAGAACAGTTCATTCGATATTACGTCGTCCATGGCACGCTCGCCCCCAGTATCCCCGCGATCGATGCAGCGTGCTCGTGCTGTCCATGGGCCAGGCATATCTCGTGATAAGGGCGTTACTTCACCCAAGAGGTCCATGTCTAAAGTGATACGGATGAATTCTGGACCAGATGTCAGAGGTCATCATTCCCATTCGGCAGCGCGATTCTCACCCTACCCCAGCTCTGCTTCGTCTACCACACTCCACTCACCTACGGGTCATCGTCCGACACGTCCGAAGCCATCTTGTGTTGACGTCGGCACCAACACGTCACTTCCGGGCTGTGTGAATGGGCGGTCACCTGACCTTCCTGCCAACCCTGTCACGTGGTCAGTGGAGCAGGTCGTCAGATACGTGCGTTCCACCGACTGTATAAATTATGCTAACATATTCTTAGACCAGGAGATTGACGGCAAAGCCTTGATGCTATTGTCACGTGACTCTCTGATGCAGTTCACTCGTATGAAACTGGGACCTACTCTGAAGATGTGTAGCTATATTGCGCAACTCAAACTTCGTGCTCGTTAA

Transcript

BRAKERYMET00000036805

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BLB7	Lethal(3)malignant brain tumor-like protein 3 OS=Mus musculus OX=10090 GN=L3mbtl3 PE=1 SV=1
Q96JM7	Lethal(3)malignant brain tumor-like protein 3 OS=Homo sapiens OX=9606 GN=L3MBTL3 PE=1 SV=2
Q9JMD2	Scm-like with four MBT domains protein 1 OS=Rattus norvegicus OX=10116 GN=Sfmbt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004967 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12140 all species →	SLED	SLED domain	Domain	Interproscan
PF02820 all species →	MBT	mbt repeat	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021987 all species →	Domain	SLED domain	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR004092 all species →	Repeat	Mbt repeat	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR038348 all species →	Homologous_superfamily	SLED domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11461	SCMH1; polycomb protein SCMH1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.