Gene detail

Detailed information of BRAKERYMEP00000036816.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029191855.2, meiosis regulator and mRNA stability factor 1-like isoform X2 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000036816

ATGGCAGCTTACCCGGTGTGGGTCGGTAATTTGTCACTAGATGCTAGAGAACATATACTTCATAACTTATTTGACACATTTGGACCTATAAAAAGCATAGTCATTCTGAAGGATGCCTCTGGAAGGTCGAAACAGTGTGGTTTCGTTAATTTCTTGTCGCAAGAAGTCGCTGAATGTGCAGCCATGAAAATGGACGGATGTGAAGTTTTGGGACAAGCGATGAAAACGAAGGGACCTCGAGAACTATTGGCGGCGGGAAAAAGCCCAACGTTTGTACCTGTAGCTGAGAATTCAGAGAAAAGAGACTACAGACCTCTTACAGACTGTATGTTTTACACGGAAAGACGCGAGTGTTGTCCGAAAAGCGGTGAGTGCCCTTTCCGACACTGTGTTGCAGCATCTCAAACTAATGTTGTTTGCGAAAGATGGACACAGAAACAGTGTACAAATGTATTTTGCCCGCGGAGACATCCAAAGCTCCTTAAGCAGCATCCAGATATTGTAAATAAAATGATTCCTTCTCGCTGTCCATCTCACAATGCTTTTAAATGTACTGGGGAATGTGGATTTGATGATTGCAATACTCACTTTATGGAGCAAGATGCCCTTCATGAGCACATCAAGAGAGGAAGGGACAAGAGGCTTTCCTTGAATTCAtcttgttcacagTGTAAGGCCATCTTCTTCACCGAGCAGGAAAGGCAACAGCACACTTGTCTAAATGCTCCAAAGCAAGCATCGGCTCTTGGTGTTGGGCCGTTCTCTGCCCCTCTCAACTTCCATCAGCCATCAAGCCTCcagacaaaaacaaatggtCCGCTTATGTTTACTAGTGCATCTCCTCAGAATATTGTCAAGCCTCAGTTTTGTCACCCAAACCCCAGTTCATCCTCTGCAACTAATCATGTACAGTTTAGGACTGCAACATGTGACTGTTCTACAAATCATACAGACAACTCTGGAAGAGGTCGAGCTGGTTCCTTCTGCATTTGTTCATCCTGTGGGAAAACCTATGAAAACTCTGGGGATTCCTTGAGTGACTTTGACTTGTCGGTTGATTCTGCAGGCATTAGCGGTCACAAATGTCCAAATTCACCCTCTGTGAGAGGACTTGTCAGTGACTTGGAAGCAATGGGTATCAAGGCATCTGCCACAGGATCCCCATCACAAAGCTCAACAGCACCTGAGCCTGAACCAGTAGGAGTATTCTGGGATATAGAAAACTGCCCTGTCCCTCGTGGCAAGTCGGCAGCAGCTGTTGTCCAAAAGATAAGAAAGGAGTTCTTCTGTGGAAAGAGAGAGGTTGAGTTCATGTGTGTTTGTGATATCAGcaaggagaagaaagaagtTATTGAGGAACTCAACAAGGCTCAGGTAACTGTAGTTCATATTAATGCCACATCAAAGAATGCAGCCGATGACAAGTTGCGGCAAAGCTTGCGCAGGTTTGGGCAGTCATACCCTCCACCAGCTACGGTCATTCTAGTATCTGGTGACATAAACTTTGCAGCTGAGTTGTCAGATTTGCGCCACAGAAACAATCTGGAGGTGATCTGTCTCCATAATGCCCAGGCTCAACCTGCTTTACTTGCTTGTGCTCACGAGGCCAGGAGATTTGACCGTTTCACTGCAGATTTACCTGTTGTGTTTCCACCAAAGTTTGAGATTGTAGACATTTGTAAATTACATGGCAGCAATCACCACCCTAACAGTAACCCATGTAGAAGAGGAGATACTTGGTTCTCTGGACAAGGATCCCCATCACAAAGCTCAACAGCACCTGAGCCTGAACCAGTAGGAGTATTCTGGGATATAGAAAACTGCCCTGTCCCTCGTGGCAAGTCGGCAGCAGCTGTTGTCCAAAAGATAAGAAAGGAGTTCTTCTGTGGAAAGAGAGAGGTTGAGTTCATGTGTGTTTGTGATATCAGcaaggagaagaaagaagtTATTGAGGAACTCAACAAGGCTCAGGTAACTGTAGTTCATATTAATGCCACATCAAAGAATGCAGCCGATGACAAGTTGCGGCAAAGCTTGCGCAGGTTTGGGCAGTCGTACCCTCCGCCAGCTACGGTCATTCTAGTATCTGGTGACATAAACTTTGCAGCTGAGTTGTCAGATTTGCGCCACAGAAACAATCTGGAGGTGATCTGTCTCCATAATGCCCAGGCTCAACCTGCTTTACTTGCTTGTGCTCACGAGGCCAGGAGATTTGACCGTTTCACTGCAGATTTACCTGTTGTGTTTCCACCAAAGGCCCCAGATGAAAGTTGCCTGTCATCTGAGCTTCTTGTTCTAAATCTGCCAGTTGGAAAGGATGCTACACAAGTCAGAAACAGACTGAAGAAACTTTCAGACAACTGTGGTGGAAAAGTTGTAACAGTGCAGGGCTCTGAGAGATGGCTCTCACTGTCAAAGCCACTGAAAATTAAAGCCTTTGAGAAAAATCTTAAAATGCTGCTTGAAGCTCAAACCGATGGAGTAATTGCCTTGGGAAACTTTGTGGCCACTTACATGAAATACTTTGGACATAAATGCAAGATTGCAACCTTTGGTTTCTCGAGACTAACGGATTTAATTGACGCCTCATCCAGTGTTGCCAAGATCCAAGGGACAGGAGACCAGCGATTCATCTGCTTAGTGGAAAAAGACAAGAGCTCCAAGTCAGGGACACACCATGAAAAGCAGACCATTGTTAAAGAACTGAAAGAGTTGCTGTCCAGTGCTGAGGGGCAGAGAATTCCAGTAGCCACAGTACTGGCTCATTACTATCGACGCTTTGGCCGTCTTTTGAAATGTGGGGATTATGGAGCTGGGCGCCTTGAAGATTTTGTGGAGGACTTGCCTTCACTGCAGGTCAAGGGATCTGGCAGTGATAAAATTCTACACCTTACCGTGACACCACCCCAAGACAAAATTCCAGTTCGGTTACAGCCTCTTGCCGACAAGATCACCAAACTGCTATTGAAGTTTCCTGGCGCCAGAGTGGCGCAGTTTGCCTTCTCGGATATTTTCTTACAAGAGTATGGCCAGGTGTTGAAGCCTAAGGACTGGGGATTTGGCAGCGTAGACGCACTGACGCGTGCCCTTGAAGATATTCTTGAGGTCCAAGGTACGGGCAACATGGCCGCAGTGTGCGTAAAGCAGGACCATCTTGTGAAGGTGTTTTCTCGCTGTGTGGTTGATCTGCTGATAGGACAGGCTGACAAGTGTGTGCGGCTGTCCAAGTTGGTGCCTGCTTACGAGAAACTCCACAACCACAAACTTCGTGCACAGAACTTTGGCTTGGCCTCCCTTGATGAGTTGTTGTCCGTTATTTCTGCTGTTGCAAAGGTGGACAGCAAAGATGGCAAACTTCGTTTAACTCCTCTACAAACCTTCGCCTTTGAGACCCGAGACCTGCTGCAGCATCTTGACGGGTGCGTTTCCCTGAACCGCTTTGCTCCCAACTTCCAACAGCTGTATGGACGACCGTGCAAAGCAGCTGATTACGGCTTCAATCGCATATCTGAAGTGATTGATACCATCTCTAATGTGGCTGAAATACGTGGCAAGAGTGCTGAGAAGATGGTTGTCCTCGTAGATGGGGGCGATGTCGTTTTACCTCTCAGTCAACATGCAGAGATGTCGAGACATCAGGAAGGCGACGCGCAGGCAGCTCGTTTGTCTTCTGACAAGAATGATGCTAATAACTCGGTTTCAGTTGCACCAGTCGATGTAGAAGAAGATGATGAAATCGTAGTTACCATTGATGACAAAGATGGAGAAGACTTAATAGTCCTTGATGGGGAAGGATCATTCAGACCATTCCTAGAGCAGACTGTGGCTGAAGATTGGCTGATGGCTCCTGTTCCGGAATCCCTCCCGGAACCAGAGCTGCAACCTGCGATCCCCGAGCCTCCCCCGGTCGGTGATCTCATATCCTTCACCGAGTTTGACATGGATGTGCTCCTCGCAGCCATCAACAACATGGGTCTGCCCAACCCCCTAAGCACGAGCCCAGGGGGGGACTTGACTGAGCTGCGGGCAGAGTCAAATGAGCTTTCCGGTGAATATAATGGTATTTGCTCACCGCAGCGAGGCAACAGGGTGCCTCCGGTTCAACGACGATCAACATCGGAAGCTGATCTGAAGGATCTGGAGTTGCCTAGTGTCCCTTGTGCGCCTTCAGTGAAGCCATCCACAGTGAAACCTGGAGTCATGCTGCACTCTGAATTGGAGGCAGATCTGCTGTCTTCCAGCCGTCCAGAACCAGCAATGCCAAGAAAACTCGCAGCAAGATTCCCTTGCGAAGCTGTGGAGAAGCCAACCACTCATCGGCGTAAGAGCTTTGAGCaggaaaagaaaggcaaagcGAGAAGGTTTTCTGCCCCTAAAGTTAAACTGGCTGCTACTTTCGGTAAGGCGCCCGGAAACTAA

Transcript

BRAKERYMET00000036816

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1BZ85	Meiosis regulator and mRNA stability factor 1 OS=Gallus gallus OX=9031 GN=MARF1 PE=3 SV=1
Q9Y4F3	Meiosis regulator and mRNA stability factor 1 OS=Homo sapiens OX=9606 GN=MARF1 PE=1 SV=6
Q8BJ34	Meiosis regulator and mRNA stability factor 1 OS=Mus musculus OX=10090 GN=Marf1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004453 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01936 all species →	NYN	NYN domain	Domain	Interproscan
PF12872 all species →	OST-HTH	OST-HTH/LOTUS domain	Domain	Interproscan
PF15663 all species →	zf-CCCH_3	Zinc-finger containing family	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR021139 all species →	Domain	NYN domain	Interproscan
IPR025605 all species →	Domain	OST-HTH/LOTUS domain	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR024768 all species →	Family	Meiosis regulator and mRNA stability factor 1	Interproscan
IPR041966 all species →	Homologous_superfamily	LOTUS-like domain	Interproscan
IPR041686 all species →	Domain	Zinc-finger CCCH domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14379 all species →	LIMKAIN B LKAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:1905762 all species →	Molecular Function	CCR4-NOT complex binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17573	LKAP, MARF1; meiosis arrest female protein 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.