Gene detail

Detailed information of BRAKERYMEP00000036848.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3172046.1, unnamed protein product [Porites lobata]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000036848

ATGCAACAAGACGAATCTGTCACGGATTGTGAGGAGCCAAGGAATCTTGAGAAGTTTGTAGCTTTATGGGATTTTGTGCCCTTGAAAAAAGATGAATTGGCACTGGTCAAGGGAGAAGTTGTGTTTGTGGTAAAGAAATACAAAGATGGATGGTACAGGGGTATTCGAGGTAGGGGATATCAGGTTGGATGCTTTCCTGGGAATTTTGTAGCAAAGGATTCTGATCAATTAGCTGAAAATGGTGAATGCCACGAAGCACCGCAAGGTCTTCTTTCATCGTCTCCCTTAGCAGAAGGTAACACGAAAGTTTTAGTTGATTTAGCACATGATCGCACAGATCTGACATCTGAAGGAAGTGGGACCGTTGAGCAGAACAGCATGGAAGATCGGCAACCAGATGTCAATCGAAATGGAATGGAGAGACATGATTCACTGAGCAATGACAGTAACAGTGGTAGCTTAAGTCCTGGCCCATTCACTTCATTTCATGGCCTGAACATTATTGCTAACGCAATGGGACAGGATGGCGAAGAATCCGAAGAACGAAAGAGAACAAGAGCTGCCATGGAACTTCTAACATCAGAGGTTTCATATTTCAATGGATTAAATCTCCTGTCCGGGCATTATATCAGACCACTTAGGAAGCTTCGTGTTATATCAAATGAAGacgtgaaaaaaatatttgcaaatgCAGAGACGCTAGAGTCAATAAGCAAAGAACTCATCGCTAAACTTCAATCCCGTTTGGCTCACTGGGATGTGAACTCGACACAGATTGGGGATGTTCTTGTGGAAATGTTTTCATATTTGATGATGTTTGAGCCCTATTTTAAAGGCAGAAAGAGAGGGAATGAGGTAAAAGCAAAATTAGAGAGAACCAATGAGAAGTTCAGAAATTTTTTAGCAAAGGTCAATTGTGGCCACACTCTAGATTCATTGCTGTTAATGCCAATTCAGAGGGTTCCCAGATATGAGCTCATACTCAAGGAATTGGTCAAACGAACAAGTGAGGATCATCCTGATTATGAGAACTTGAAAGAAGCAAAGAGCAAAGCTCAAAAGACAGCGGAAGCTTTGAATGAACACATTCGGCAAATCGAGAATGAGACCAAAGTTGTTGAAGTCATAAAGAGTTTTCCAAATGATGAGTTGAGGGTTCCCAGATATGAGCTCATACTCAAGGAATTGGTCAAACGAACAAGTGAGGATCATCCTGATTATGAGAACTTGAAAGAAGCAAAGAGCAAAGCTCAAAAGACAGCGGAAGCTTTGAATGAACACATTCGGCAAATCGAGAATGAGACCAAAGTTGTTGAAGTCATAAAGAGTTTTCCAAATGATGAGTTGAATCTCATTCGACCTTCAGGGAAAAACAGTCCAAgaAAACAGATATCAGTTGGATCTGTTCGACTAAGGAAACACGATAGAGACCACATGGCAACTTTATCAAAGAGTCTTAAAAGGATATCTCTTCCTTTGATGGACACCATAGATACCTCTGCTAATATTCCTCGACGTGGCTCCTCTACAATTACACGCAACACTTTGCCTCGCAGTGCAGaaaacagtgacagtgacagcgACACAGAAGCTCCACAATTGGGTGACACTTACATAACCAGCTCGTACATTTATGAGGGCGAAGTTGAGCGGATAACCAAGAAATTCACAGGATCCAGTGAGGGTGGAATGGTACATGAAACAGTTGAAAGACATCTCTTTTTATTTAACAATGTCTTGTTGGTTGGCATGgcatcAGAAAATCTCATAACAGGAAAGAAAACCTACAAACTGAAAGACCATGTTTCTTTATCCCAAGCATGGCTAACGACGCCCAGTGCATATTACAGCAATCCACCAGAAAATAtgtttattcTTGGAACACCCACTCAAATCTACAAATTCCTAGCATCTTCAGAGTCAGCAAAAGACACATGGGTTAAAAAACTCAAAACATgtattgagaaagaaaaagaagcatttgttGAGTCCTTTAAAGGGTTACCTGTTCCTGATGAGGAGTTCTTAGCAGTTTCATTAGAAGCTAAAATTGATTATAACAAGATGGTGGACTTAGAGCTTAATTTGAGGCAAGGTGAAGAGGTCTTAATTATTGGCGTAAAATCTGGAGATCTGTGGCTTCCAGGGCTGTATCCTGTGAGTGTTTGTGAACTTGAGTTAGCTTGGTGGCCTGGACTTCACAAAGGCAGATTTGGTTGGTTTCCAGcTCAGTGTGTAACAGGACCTGATGTAACAGGTCTTACTGCCACAAATGAGTTTCACCCCGTACCAGTAGCTGTGGCATTGAATGGAATAAAACGAACAATGATGAAATGGACAGGAAGCAATCTTCCAGTTCCTGTCATTGAAGATATGACTACATTAAAGGTTTtcaaacctgataaaacatttAAGacttgcAAAGTTGAACCACACTATTTGGTTTCAGATGTGTTGAACCAATACACAAGGCACAAGATTTTTGTGGGGGCACAGATTGATACAGCAGTACTAGAAATGTGGGAAGAATCATTAGATGGTTCTTTTCGTAGGTGTCTGGAGCCACAGGAGAAGTTGCTGGATATTTTTGCTATGTGGGGAAAATATCAGGAAAAAATGAAGTTTGTCATTCATAATATCAGTGAAAAACAGAGGAAGCAATCAAAGgctgagaaagaagaaaaacaagaaccccCAACTGGAATACTTATCTCTATTGATCAGTAA

Transcript

BRAKERYMET00000036848

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q553D3	Rac guanine nucleotide exchange factor JJ OS=Dictyostelium discoideum OX=44689 GN=gxcJJ PE=1 SV=1
Q1ZXH8	Guanine exchange factor for Rac 30 OS=Dictyostelium discoideum OX=44689 GN=gxcDD PE=4 SV=3
O88387	FYVE, RhoGEF and PH domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Fgd4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007354 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR051092 all species →	Family	FYVE, RhoGEF and PH domain-containing	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673 all species →	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005089 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000036848.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.