Detailed information of BRAKERYMEP00000036994.1 in Astreopora myriophthalma

Genomic Location: BLFK01001094.1:1415771...1420483
NR annotation: XP_029193345.1, nuclear distribution protein nudE-like 1 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q66IZ7Nuclear distribution protein nudE-like 1-B OS=Xenopus laevis OX=8355 GN=ndel1-b PE=2 SV=1
Q6DK98Nuclear distribution protein nudE-like 1-A OS=Xenopus laevis OX=8355 GN=ndel1-a PE=2 SV=1
Q9GZM8Nuclear distribution protein nudE-like 1 OS=Homo sapiens OX=9606 GN=NDEL1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007770 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04880
all species →
NUDE_CNUDE protein, C-terminal conserved regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006964
all species →
DomainNUDE domainInterproscan
IPR033494
all species →
FamilyNUDE familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10921
all species →
NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000132
all species →
Biological Processestablishment of mitotic spindle orientationInterproscan
GO:0000776
all species →
Cellular ComponentkinetochoreInterproscan
GO:0005813
all species →
Cellular ComponentcentrosomeInterproscan
GO:0005871
all species →
Cellular Componentkinesin complexInterproscan
GO:0007020
all species →
Biological Processmicrotubule nucleationInterproscan
GO:0007059
all species →
Biological Processchromosome segregationInterproscan
GO:0007100
all species →
Biological Processmitotic centrosome separationInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan
GO:0016477
all species →
Biological Processcell migrationInterproscan
GO:0047496
all species →
Biological Processvesicle transport along microtubuleInterproscan
GO:0051303
all species →
Biological Processestablishment of chromosome localizationInterproscan
GO:0051642
all species →
Biological Processcentrosome localizationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERYMEP00000036994.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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