Detailed information of BRAKERYMEP00000037278.1 in Astreopora myriophthalma

Genomic Location: BLFK01001100.1:139203...139520
NR annotation: XP_029212265.1, U8 snoRNA-decapping enzyme-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P3D0U8 snoRNA-decapping enzyme OS=Mus musculus OX=10090 GN=Nudt16 PE=1 SV=1
Q96DE0U8 snoRNA-decapping enzyme OS=Homo sapiens OX=9606 GN=NUDT16 PE=1 SV=2
Q2V8X7U8 snoRNA-decapping enzyme OS=Ovis aries OX=9940 GN=NUDT16 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007961 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00293
all species →
NUDIXNUDIX domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015797
all species →
Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan
IPR020084
all species →
Conserved_siteNUDIX hydrolase, conserved siteInterproscan
IPR000086
all species →
DomainNUDIX hydrolase domainInterproscan
IPR051894
all species →
FamilyNudix hydrolase family, NUDT16 subfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31699
all species →
NUDIX T16 FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016787
all species →
Molecular Functionhydrolase activityInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006402
all species →
Biological ProcessmRNA catabolic processInterproscan
GO:0016077
all species →
Biological Processsno(s)RNA catabolic processInterproscan
GO:0030515
all species →
Molecular FunctionsnoRNA bindingInterproscan
GO:0050072
all species →
Molecular Functionobsolete m7G(5')pppN diphosphatase activityInterproscan
GO:1990174
all species →
Molecular Functionphosphodiesterase decapping endonuclease activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03574mutT, NUDT15, MTH2; 8-oxo-dGTP diphosphataseEC:3.6.1.55
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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