Gene detail

Detailed information of BRAKERYMEP00000037848.1 in Astreopora myriophthalma

Genomic Location: BLFK01001130.1:1497268...1516102
NR annotation: XP_029187441.2, bromodomain adjacent to zinc finger domain protein 1A-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERYMET00000037848

ATGCCTTTGCTGAACAGAAAACCGTTTTCACCTTTAAAACCACCTCCGGATCTGAGGCCAGACGAAGAAGTCTTTGTTTGTCGCCATACACAtgaagtttttcgtgattatggGTCGTTTTTTGAGCGTACAATTTTGTGCAACAGCCTGTTATGGAGTTGCAAATACACTAGCAAGAGTGGTTTAACGTTCCAAGAGGCACAGGCTTCAGAAAAATCAATCAGGAAGCAAGCACAGAGTCTTCCAGAGCCCATCCAACGAGCGGTGCTTACTCTTGTCCACCACACTCAACGTGGTCGACTAGCTAATTTATGCGATGAAGTATTTTCTTACTTGAGGGATCACTTCCAGGAAGGCGAAGAAGTCGAGATTAATTATCACTCGCTCAAGAGAAAAGGCATAATAATTAGAGTGATTCCACCTGAGGAAGGTACCAGCCATACACCAAACAAAAGCGGAAAGTCTGCTAAGTCCAGGAAGCACAGCCATTCTCAGGAAAAGCTTAAATCGCCGTCCTCAAAGAATCAGCAGGAGCAGTCTAATTTCAAAAGTTTTAAACAAAGGACTGGTAGTTCCAGTAGTTTAGACAGTCAGCCACTGTCATACCAGGCTAAGATGAGCAGTAGCTCAGACAACGTACTTGCCAAGTCACCAACTGTAAGAAGCCCAAGGAAGAGTATGGATGGGGAAACACCTTCAAAATCGAAATCACGAAAACATAGTGGAGAAAGTTCTAGTGACAAAACTCCCAACAAATCACGGAAGCATTCATCAGATGAGAGAGGCACGCCATACAAAGCTGCTAGCAGCGATAAGATGGCTAAGAAATCATCAACACCCTCTCCAAGGAAAGGCAGTGAAGATAAACTTGGATCACCAAAGAACAAGTCACCAGGTGGTTCAAACATTCTAGGTTCAcctctggaaaacaaaaaatcgCCAAGCACTAAAACTAAGAAAAGCTCTGAGACTGAGGTTATAGTTATtgatgacaacaatgacaaGCAATGCAGCTCACAAAGGCAATCTCCAAAATTGTCATCCTCTAAGGAGAAGCCAACATATAACTGGCCAGATGCCTCTTTATACCAATATGAAGTGAGACTTCATTCGGATAGAAAAGGCAAAGCATTGAGGAAGAAAGAGAAGCGGTATGAAGTTGTGAGGGTGCAAGCCTCGGCTGTCAGCCGCAGAAAAGGTGTCTTCACAAGAGAGAAACTGAAACTGTTCCTGAAGATCAGTTGTGAGAGAAGTACTCCTCACTCTGAAGATGGTGTCTACATCGTTCAGCGAGACTTCCGAGACAAATTTGACCTTGGCGAACCAGACATTCCTTTGAAGCTGGTCTCTCCCCCAAAAGACAAGAAACAACGAAAAAGAAGTCATGGGGACCGTGTAGAAGAAGATGGGCCTGTTAAGAAGAagagaaggaagaaaaagacaGATGAAGAAGTAAGGAATGAAGGGAATGGATCatccaaaaagaagaaagaaaagGGCAAAGGTGGTAAAACAAAAGAGgacaagaaaaacatgaagcTCCCTGCCGAGGAGTTCCGCAGACTTatggaagaggaaaaagaaagaaagaagaaacagcttgaagaagaaaaggaaagaaagagagtggaaaaggaaaaagaaaaggccgAGAACAAAGCcagaagagaagaagaaaaggcTGTTAGAAAAATTGAAAGAGATAGGGAGCGTGAAAgacagaaagaagaaaagaggcTTGAAGCGATCAGATTAAAGGAGTGGAACAAGCCAAGAGAGGATCTTGAGTTAGACGATTTGAAGGACCTGCCAAAGGCCACACCAGTCAGGATCAAGCTTCCATCAGATCTGTTTGGTGATATGATGATGGTGTTGGAATTTCTGAATATTTTTGGAAATCTATTTGACATCAAAGATGAATTTCCAAATGGCCTTTCCTTTGCTATGCTGGAGGAAGCTCTCACAGAACATGACGCTGAAGGTGTGTACTACGACTTGCTTCTGTTCCTCTTGGGAGCCATACTGCGCACTCACctagaggaggaagaggaggagggtCTGGATGGAACCCATGATCATGAGCCCCTTGTGGACATAGATGACGACGGTGATGAGAAGTTGCAATCGACTGTTTCTGCCTCGGCATCTATGGCAGCAGCATGGCCCATGCAGTACCAAGGGAAACCACTCCATGAGCTAATTATGGACCCATTTACAAGCTCGGAGTTGTTGAGACTTCACTTGTTATCCTCTGGTGCCAGAATAGGTTGTGGTGAATCTTCGTATCGCTGGCAGCGTCGGGGAGGTTTCACCTACTGTGACGATGCTGGAGTCGAGTTCCGCCATGATGCACCTCACATTTTGAAGGCATTGGTGACAGGCAACATCTATGACATGGGAGCTGAAGACAAACTCAAAGTACTGGTGGCTCTGTGCACTCAGCTTATAACATATGCCACAGCACGAGACTACGTAGAAGAAGGCTTTGACCAGTGCCGCAAAGTCCGTCGGGAATGGCAGGAGGATCAATGGGCGGATCATCGGAGGGACAAGGAAGAGGCCGCTGCAAGGTTCCGCCGCAAACAAGAGGAGAGGCAGCGGCAGAAAGAAGAGCTGGAGAAACGGAAGAAGGAGAAAGATCAGGAGAAGATCGAAAGAGAGGGAGAGGCAAGTGCAAAAACTGGAGAATCAAGCAAGACCGAGTCAGAACAGAATGAGGGCGATCAAGCAAACAAAGGAGCCAAGAAAACAGGCAGAAAGAAAGAGCAAACACTGGATAGCTCTCAGTCAAGTGAAACTACATCTAAGGAATTAGCCAACACAGACGAGAGGGCAGCAGAGGAGAAAGCTGACAGCAATCAGCGCCCTGCTTTGAccaaagaagaggaagaggaacttgcacagcaaagaaaagaagatcGCAAACGCAAGGACCAAGAATTTTTCAATCAATTGGCGAAAGCAGTGTCAAGGAGTGGAATACAGCCATTAGGCCGGGACAGAGTATTCAGGCGCTATTGGGCTTTCAAATCATTGCGAGGACTGTTTGTTGAAGATGAGGATCCAGACCAACACCTCTTGTTAGAGCCAGAATCGGAGAATGGTGAAGATGAAAGCGTTGATGAGCAACAAGGCGAGAATGACAATCAAGAACGAGAGAATGGAACGACATCACCTGAACCAAGAAACAGTGTTAGTAAATCTTTAATCAATGGTCACAAGGAGGGAAAACACAATGCGAAGAACGAGAGCTTCGAAAGAAAAGTCTTGAATATGTTCAATGCATACCAGTTAACGAACAATTCACCCGAGAGGGACTACTGTGATTTTTACAAAACGAGGCCAGTTGTAAAATGGTCGTTTTTCAGTTGCAGAGAGGATGTAGATAGTCTTTTGGATGCTCTGAATCCAAGAGGATTTCGAGAGAGGCTTTTAAGGGAGGCAATTCAGCAGGACTATAAACAGCTAACTCTCGCTGTTGAAAAGTGCCCGTTAAAAGAGGATGTCCAAGCCCAGAAGAAGGATGTGAAAGGGAGAGGGAGGCGAAGCGGGAGACATCAGACAACTGTGGATAAATCGCGGTACAAAACGATGGAGGAGTTCCTCGAGGCCAACCTGCGCGACCAGATTCTAGACTTGGAGGACAGGATATGGCAAGGAACTTTGGGGAGCTTAAGGGGAGTGGAGCGTAATGAATGGAGGGCCAAAGTGGAGAATGGAATCTATAGTCGGTTTATCGGGGAACAGGGAAGCAAGGAGTTGAAAGTTAACGGTGTGGGTGAAGCAGAGGAAAGTGGTGCTGTAGAACTGATGGAGGTCGATGCAAACGTTGGCGAAGAGGGCAGGCTGAGCGAACTGTCTAATGATAATGAATTGGGAGTGAAGAGGGAAGAGAAGGAAAATCCGATGGATTGTGATGAAACCGAACAAAAGCCAGTTGTTAATGGTGTCAGAAGTAATGCCGAACAGGATTGTCATACAGGGTCGGAGGAGCTTAGTAAGTCAGAAGACAAACCGGCAGATCGTTCGTTTTCAGCTCTTCCTCTTCATCTGCACCTGGACAAGAGCCAACCTACATCACCTGCAGGCAGCACACGCTGTAGCACACCCACTATCAGCTTAGTTACAGGCTCGGCTATCATTAATCCATCAGTGAAAGAGCTCGCACTTGAGCTTCTCAAGGTTCAACAAGGGATTGAAAGAAAATATCTGAATCCACCCCTTGGCGAGGACGAAGAGACCAAACGACAAAGGCAAAAAGAAGCAGCCGTCGCGGCCGTGAATGAGTTCAACGAAATGATGAAGGCAGCGGACAATAAAGAGAAACATAagaaagataagaaaaagccGGAAGCTCAAGATGATGGAGCAGAACACAAGGAAGGCGAAGAGACGAAAGCCAATGAACTGGATGacgacaacaacagcagcatgaGTTCCTCGGTTGGTGAGCCTGTGAAGCAGAAGACATGTCTAGAGAGATGGGAGGAGTCCCTGCTCGCCTGCACGAACCTTTCTCAGGTATTCGTGCATTTGAATACGCTGGATCAGTCCGTGGCCTGGAGCAAGTCGGTGCTGAATGCGCGGTGTCGACTGTGTAAGAGGAAAGGCGATGCCGAACACATGTTGCTATGCGATGGCTGTGATCGAGGGCATCATATGTACTGTCTTAAGCCACCCATCAAGGAGGTGCCTGACGGTCAGTGGTTTTGTGCAGACTGCCGTCCAAAGGAAACGAGGCACAGTGAAAGACGGAAAAGACCCGAGGCCAACGAAGAAGAAGGTGATGATTATGAAAAAAGATCAGAAGACGAATATGACAGCTCTGATGAAGACAGTGAAGAAGCTGGAGAGGAGGCTGAAAGTGAATCAGAAACCGATCTAAACGAAGTGCAAAGTGATGCAAGTGAAAGTTCCGAACATGGTGATCAATGTGCAGTTTGTTGTGAGGGAGGGGAGCTTTTGTGCTGTGACACCTGCCCGTTAGCGTATCATGTCCATTGTGCTTATCCACCCCTACGGCGAATCCCGCGGGGAAACTGGGCCTGTCAGGTGTGCACTGGGGCAGATGACGAACGACCACGGAGCTGCCGCGTGAAAAAGGCAACTATAGAAGCTGCCCAAAAAAGTATAGAGCGAAGCATAAAAGTGGTGAAGAAGAAGCAGACTCGTAGTACATCCCGTCAGGGTAGCAGACAAGCAAAGAAAAGTATCAGTCGGTCAAGAAAGCGACAAGTGTCTCTTTCACCATCGCCTCCACCGCGCTCGCGAAAAACAGGTGGCAAACCCGACAAGAAACCACCGAAGCGCCGACGACTGTCTTCGTCGTCACGATCGTTATCATCTCGTTCTCCTTCGCCGGCTCCGAATTCTGGCCGAAGGGGAACTGTCAAGATAGTGGCTCGTCGACGTGGCCGAAGTTCTATCGACTCTTCTCGTTCATCGTCGCCGGTGATGCGGCCTCAAAATAAAAAACCTGCGGGCAGGAGAGATCCCAAGCTGGGGACCAAGTTTGTCGTGTGTGAGAAACTACTGAAGGAGGTGATAAATCACGAGGATAGCTGGCCTTTCCTTGAACCCGTCGATCTCACCGAGAACCCTGACTACCTTCACTTCGTGCAAAAGCCGATTGACTTGGGCACCATCAAGAAGAATCTGGCAGACAAAGCCTACGAGTCTGTGGAAGATTTTGTCTCGGACGTTCGTCAAATATTCATCAACTGCTCGGAATACTGTAGGCCGCGTGGAAAGGAGGCTCGTGCCGGGGTCCGACTGTCCGCGTTCTTTGAGACACAGTTTTCCGAGTTGGGACTGGACACAAACGAAGGACGAACCACTCGCAGTCGGCGGACATGA

Transcript

BRAKERYMET00000037848

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88379	Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus OX=10090 GN=Baz1a PE=1 SV=3
Q9NRL2	Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens OX=9606 GN=BAZ1A PE=1 SV=2
Q8UVR5	Bromodomain adjacent to zinc finger domain protein 1A (Fragment) OS=Xenopus laevis OX=8355 GN=baz1a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004993 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10537 all species →	WAC_Acf1_DNA_bd	ATP-utilising chromatin assembly and remodelling N-terminal	Domain	Interproscan
PF02791 all species →	DDT	DDT domain	Family	Interproscan
PF15613 all species →	WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	Family	Interproscan
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF15612 all species →	WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013136 all species →	Domain	WSTF/Acf1/Cbp146	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR018501 all species →	Domain	DDT domain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR028941 all species →	Domain	WHIM2 domain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR028942 all species →	Domain	WHIM1 domain	Interproscan
IPR047171 all species →	Family	Bromodomain adjacent to zinc finger domain protein 1A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46510 all species →	BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008623 all species →	Cellular Component	CHRAC	Interproscan
GO:0031445 all species →	Biological Process	regulation of heterochromatin formation	Interproscan
GO:0045740 all species →	Biological Process	positive regulation of DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11655	BAZ1A, ACF1; bromodomain adjacent to zinc finger domain protein 1A	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →