Gene detail

Detailed information of BRAKERYMEP00000037974.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: KAJ7390772.1, Nidogen 1 [Desmophyllum pertusum]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000037974

ATGCGGATTCCAGCGTTGATTTTCCTCCAGCTCTTAGCATTTGCAAGCGGCGTGGGTCTCAGCGATTTATTTCCCTTTGGTGAAGCATACGGGGACCTCAAACTCCTAAACAAGGGGCAGCCTTTTGGAAGAGTATTTAACCTCAATGGCACCTACTCTTTTTATAATAAAGGGTTCAACGCTTTACAGGTGCACAGCGAGGGGCTTATTACACTTGGAAAGGAGACATTTTCCAACGCTGCTTTGCGGCACAGAAAGTTTCCGTTTCCTCCAGACACGCCTTCTATTGCAACATTCTACGCACCCATCGAAGTAAATCATTTCGGTGAAGTTTTCTACAGAGAGACACGTGATCAAACTGTTGTGAAAAGGGCAACGGCTTACGTGAGATCAAGTTTTATGGAAGAAGCTACTTTTACAGCAACTCACGTTTTTATTGCTACGTGGAATAATGTGACTCACGCAAACTACAAGTTCCCCAATCAGGTGCACAGCGAGGGGCTTATTACACTTGGAAAGGAGACATTTTCCAACGCTGCTTTGCGGCACAGAAAGTTTCCGTTTCCTCCAGACACGCCTTCTATTGCAACATTCTACGCACCCATCGAAGTAAATCATTCCGGTGAAGTTTTCTACAGAGAGACACGTGATCAAACTGTTGTGAAAAGGGCAACGGCTTACGTGAGATCAAGTTTTATGGAAGAAGCTACTTTTACAGCAACTCACGTTTTTATTGCTACGTGGAATAATGTGACTCACGCAAACTACAAGTTCCCCAATCAGGTAAATACTTTTCAGGTAGTCTTGATAACAGACAGTGTGACCACATTCGCTTTGTTCAGCTACAAGTATGACGGCTTGCAGTGGATCAAGGGATACCATGTGCGATTCCAAGGAGGCCGATATTTCTATGCGCAAGCTGGCTTTAGTGCTGGGGACCAGGTCAGATATTATCTGTTACCAGGATCAGGAACTAGAGATGTGAAGTTTCTCTCCACCAAGTCTAATGTGATGCTCCCTGGGCAGTGGATGTTCAAGATAGGCAGGTCAAACATGAACGCTTTCAACGTGGAGGCTGCGGACAGCTTTTCCCAGGAAGGATCCAAAGGACCTGTTTACTTCGTCGTGGATCAGTACTTCAATGGTTGTTTCAAAGTTCATGCTTATCTTTCATCCAACGCAAGTGAAGTATGGCAGGATGTAAGTATTCGCTCGTGCATGATTATATGCCACGAGAGAAACTACAGATACGCTGCACTTCACAACGGCGACAAGTGCGCATGTTTGGACGAGCTGGAATACAAGAGTCTGGAAAAATTACCAACGGAAGAATGCGCCGTTCGATGTGTGGTAAATCGCGAAGAGTTTTGTGGCGGCAAAACCACTGCCTCTGTGTTTTCGGCTGTGGCCGGCTCCATTTTGTCCAGTGATGAAAGAAGTACCAGATTGGAAGATGTTGATGAGTGCGCTAGCGGCGTGTCCCAATGCCATCCAGATGCTACATGTAAGAATTCGGAGCCGGGACACTGCTGCGAATGCAACGAAGGTTACATTGGAAATGGAGTCGTTTGTGAAAGGGACGGAGCAACTCTTCGCTTCAATGGAAGGTTGAGTGGCAAGATCAATGGTATCGGTTTGCCATCACTTATTATCGATGTGATCGGGATTACTAAAGACGGCCGTGTATACGTGGTGCTAAGGAACCCACCGGGAGGCCTCGAGCACTCACTGAAGATGCTAACGCCGTTTGCTAATTTTTTGGGCTGGATGTTCGGTGTGAAGAACGCAAAGGGTGTTCCCAATGGCTTTGGTGTTATAGGGGACAAGTTTACAAGAAGTGCGGTGGTTTCCTTTGATTCTGGCGAGGAACTAAACTTAACTGAGACTCTTACTGGAAAAGATGCAACCGGCCGTTTCATCACCATGACAACTGCAATCAATGGAACAATGCCAAACATCAACCCGGAAGCAAAGGTCCGAGTGAATTCGTTTAAAGAAGTGTATCGCCGAGAAGACCGCGGAAGAGTTGAATCGGACGGAGCAGTCACTTTTCAAGTAGATGGTCAAGCTAACGGTTTCTCTGTACAGCAGAGTATCACGTTTGAAGAACTGAAGGGATGTGATACCGATTTTTATAGTTTTGACGTCGACTCTAAGGTTTTGTTGTCGAAGTATGATGCAAGGCAGAAGTACGCTGTGGTCGCCATCAGGTCGTTTATCGTTAATGCTTCAACACTGGACACTCAAGGACAGCAAGTCAATGGCAATCCTTGTGGTCTTACAAAGCAAATTTGCCACTCAAAAGCTAGCTGCGTTAGCGACCAGGCAGATGAGCATTGTCGCTGTAACGCAGGTTACCAAGGAGATGGTGTCAACTGCAAAGACGTAGATGAATGCCTGGCAGATTTGGTAGGGTGCAGTTCCAACGCTGAGTGCATCAACACCAAAGGCTCATTCTCTTGCAAATGTGTCAGTGGATTCAAGGGTGACGGTTTTACTTGCCGAAAAACCTCTCGTTGTCCTCAAGAATGTGACCCAGATGCCAAGTGCACGGACATTTCCGGCAGCTGGAAGTGTATCTGTAATGCCGGCTTCAAGGGTGATGGACTCAGTTGCGAGCCCGATGGTACTTGTGCTGGAGTGCGGTGCAGTGCGCATGCTCAATGCTCGTATGCCGACGACAACTCGAGAAGATGTGTGTGCAACGAGGGATACCAAGGCGATGGACAGAATTGCACTCCACGTGACAAATGTGAGGACGTCACGTGTGGACTCAACGCCACATGTGATAACACAGGGAAGTGCGCCTGCGATCAAGGTTTCCAAGGCGATGGACAGCAGTGTAAAGacaTAAATGAGTGCTTAGAGGATAATGACTGCGATGCATACGCTGACTGCACCAACACTAATGGATCATACACTTGTTCATGCAAAGATGGTTACAAAGGCAACGGGAAGGAATGTATCAAGAGAAGCTCTGCTGGTGACTGCAACGGACAAAAGTGTCATATATTCGCTTCTTGCTTTTTTGACCCGTTTAGTGGAGAAGTATCCTGTGGATGTCAAATCGGCTTCATTGGTGACGGACTGAACTGCGAAGACTTGGATGAGTGCTTAAATATATTAGACATTTGCCCGGACAACAGAACTAAATGTGTAAACTCATTGGGAAGTTTTGAATGTCTGTGTAAGAAAGGCTTCATGGAAGTTAACAGGAAATGTGTCTCTGATGATACGTGCATGGGGGTGGACTGTGATCCTAATGCCCTTTGCGATCCTATCCGCGGATGTTTGTGCAAACCTGGTTACCAAGGAAACGGAAGAACATGCTTTGGTAAGCAAATGTGA

Transcript

BRAKERYMET00000037974

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10493	Nidogen-1 OS=Mus musculus OX=10090 GN=Nid1 PE=1 SV=2
Q14112	Nidogen-2 OS=Homo sapiens OX=9606 GN=NID2 PE=1 SV=3
P14543	Nidogen-1 OS=Homo sapiens OX=9606 GN=NID1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003018 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07474 all species →	G2F	G2F domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF06119 all species →	NIDO	Nidogen-like	Family	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR003886 all species →	Domain	NIDO domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR006605 all species →	Domain	G2 nidogen/fibulin G2F	Interproscan
IPR009017 all species →	Homologous_superfamily	Green fluorescent protein	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24039 all species →	FIBRILLIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000037974.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.