Gene detail

Detailed information of BRAKERYMEP00000037988.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029191275.2, LOW QUALITY PROTEIN: autophagy-related protein 2 homolog A-like [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000037988

ATGCCTTGGTTCTTCCCTTGGTCGGACTTCATTAAGAAAAGGGCCTGCAGGTATTTATTACAGCATTACCTCGGCCATTTTCTGCAGGAAAAGCTGACATTAGATCAATTGACCGTCGACCTTTACAATGGAACTGGACGTGTGGATAAAGTCCCTATTGATGTTTGGTCTGTGAATGAGATGCTGGACAATGCTGGCATTCCTCTTGAGATGATTGATGGGTTCATTGGCAGTATCTCAGTGTCCGTCCCATGGACAGCTCTTCTCAGTGAAAGCTGCTGCATGGATATACAGGGGCTTGAAGTTACCATTGCACCGAGACAAAGGGTTGATACAGGAGGTAGCATGACTGATTCCATGGTATGGAATGCCATGACAACAAGCATGCAACTTGCGCAGGAATGCTTGAAGGAAGATCCGTCCACTGGGGAAGAACAAGCTGATGCAAGTGCACCCTTTGAGGGCCTTGAATCCTTTGCTCAAACCATAGAATCAGTCCTCGCAAGAGTGAAACTTTCCTTCACAGACACAGTGATCAGATTTGAACACTTGCCAAAGGATACTAAAACAGGAATAGGTTTAGAAATCCACATTAAAAGAATTGACTATTCAGACTTGTCCACGGAGCTTGCTGAGAGGGACAGCCATTACAAAGCCAAAAGTGTTTATGAACCTGCTGCTTGTGCCTGTAAGAAGCTTAAAATCTTTGGAGTATCAGTTCACCTAGATGAATTCCCAGAGCAATCCAGAACAGTGCCCCAAGTTTCAGACTATCCAGAGTCACCACCACCCTCCCCTGGTAGTGGTTCCTGTTCTCCACCTCTCCATCACCCCCACAGTACTCTAGAGGGATTGTCATTGTCAGCTGAACAATTCCACCCACCGCCCCTGTCAGGAAGTCTTTTACCACAAATTAAAGTTGCCACATTTGCTGGTCACTCAGAAGTCAAACTCAAGTTGAAACAGAATGTCGCTGTTCCTGGGCCCAAGGTGGATGTTGAGTGTTTTCTTGGGACCTTGAACATATTCCTGTCACCCAAACAAATTCATCTTCTTACTGAATTTTCAACTGGATTTTCATCTCCAGACTTGTCCAGCCAAACTGCTGAGAAAGGCCATTCGATCAACAAACCCATGAAGCCAGAAGACTATCAGAAAATAGAACAGGAGCTGCAGAATCAGCTCATGTCCACGAAACTCCAAGAACAGAGACACCAACAAGCTCAACAAAGAGTTAACGCTTGGAACTTTAACTTTGATTCCTGTGCAACAAATGATGCACTCCCCCACTACTCCTCAGGCAATGACTATGACAGCATCTTAGGGGATGGGGGAGAGGAAACTTTTTATTCTATGTCATCCAACCATGATGCACTACCTCCTCTTGAAGAGCCTGTTTTGCCTGCTGACATGCTGATGTTAAATAGAACACCATCTGGTAATCTGCTACAGTCACCAGACTTTTCCCCTTTGGGAACTTTGGGAGTCTTGCAGTCATCTCCTTATAAACTGATGAACACAATAGCAAGTGACAAGAGATTTGTAAACCAGAAAATTCAGATACCAGGGACTTCTCTGACAGAAGCTGCTGGGTCCATGTTTGTCAGTGCTAAGCAATCGGTGTTGTCTGTTAATGAAGTTAAGACAGATGGTCCCTCAAGACACCGTCTGTCATCTACTAACCCTGGGCTAGCTGGAATAGCAGCCATAGATGACCCTTGCCCTGATGTGactaaagtcactgtcaaactCACCAGCCTTGCTGCAACATTGCTCCATATTGATCCAATGTTGGCACCAACATCAGGGGGTAAGGGTTGCCCTTATGATGACAGTGCACATCCATTGGCTTGCATGGCAGACAAGTTTTTTTCCAACCTTGGTACTTATGGGTTTGGGGGAAAAGACTTTGACGAAATGTCTGAAAAGTTTGTCTCTGCATGCACTGCAGATCATCTCAGGTGTATGGCTGCCCCTGtttcatttgaatttgaaaagacGGTCAGCAGTTCACATCAGACTGGAAAAAGTGAATTGTCTGTTGGGAAAATGGAGCTCAGTGAGTGTTTATTTGAGAGGTCAACAACTTCAGCTTCAAACCCAACACCTTACTCAACTACAGAGTTGCTCAAATTCCAGTCAAGGGAAAGTGCAGCAGCACCATTTTACGGTTTTACTCCTACATCTACCCTTCCTTGCATCAGACTCAAGTACAAAAGCACAAAAAGGACAACGTCACCTAGTGGTGTTCAAAGTCGGAATGTTGTATTACCAAAATCGGAGTTATCATTAGAGCTTGGGAGCCTCCTTTGTGAATTGGATGTGTCCATTGTGGACAGATTGACAGCTCTGTTGGACCCACAACCCATCTTTGTGAATCAACCCTCAAATGTGCAGTCCCGCATGTTCCGTTCTTGTAATCCTTCTCTAGTGAATCAGCAGGCGGTGTTTACTCAAGCCATGGAAGATGCTCCCATGGTAGAACAGCCTTTTGCTATTCACGTTACCTGTCCTTCATTAACTGTTGTCCTTAGATTTCCCATTCCTGACTTACGACCAGCTGTGGATCGGCGTCCTTGGTGGAAACAGTCCTTGCGCAAGGAGCATCTCACGTTCGAATTTTCAGCTGTTGAATGCAATACCTCTCTCGGTGCATCTGAACAGCCTTGTAAATACAATTTCAGCTTCAAAGAAATGCATGGTCATTTCCAGGAAGACACCAGCAGTACATGTGTACCAGTCATTGATGTCACACATGGTCAATCCGAAAGTGACACTGGAAATGGGGGCTTTGATTGGCCAAGAATTGTGGTAACAGTTCAGCCTCCTGCTCCACTGTCCACTTTAGAAGAAGTCCAGTCTTCAGATAACTCTCCCCTCAGTTCCATAGATGCTTATCCTGTCATGAAGGCTGAACCTTCACCGTTCTCTTCCAGGCCAGTCATGTTTGAGACTGAAGAGCTTCTAATGCCTGGAAGTCAGGAAGAAATGACCAGGTTTCAAGAGGATACAGTGTCATCCTCTAAGGTGCACGTGGAGTGTACCTTTCCTAAACTGGATGTCAACCTGCACACAAAAGATGTGTTTGAGAATATATATAACAGATTGGCAAGCGACCTGTTGTTATGGGAACCAATGGCTCCTTCTCCCACGGACCGGCCGGACCCGTGTGGAATCAATATTGGTACAGGGCTGGACCTGGCAACCCAGATGCTACAGGCCCAAGGACCTGATCGATTTGTTATGTGCAGATCAGGACTGCGTTTTGACGATGATGCATCCTCATCTGAAGATGACAGCAGCAACTTAACATCACTGGGAAACAAGTACAAGCGTACCAATTCAATTCCCAATGGCCAGACTGCCTTCACCTTAACACTCAATATCAGTAAGGCCAGACTGGCAATTTTTCCTATCAGTGAGAGTTCATCAACAAATTCTAATCCCAAGGAATATATCTCCTGTCCTGATCAAGTGCTTGGAGAAGTAGCAGCCGAGTTTAATGATGTGGTATTTTTCATAGCAGCCTGTTATAAAAGTCAAGTCGATCTCAGCTATCTTTGCCTTCAATCACAGAAGGTCTCCTTTCAACATGCTCCTTTGGTACCACAGAGAGCCCATGCTTCAATGGAGTCAGCTTTTAGTGGTGCTGAACTCCAGTCCACTCTCTATCACACTGAACCGGGCATGAGACATGTCAACGGGAGGACTAGTGAGCCTATGTTTGCCTTTGCTATTAAGGTTTCCTCAGACACCACAAAGAACATTAAGgaaattttgttttctttgggacTTCGTCGATGCACTCTCCGCCATAGGATGCTTTCTTCTAAACAAATGTGGCTGACACAGGTCACAGACTTCTTTGACGTGAAGGATGACCCAGTTCTTGGTTTTAGCCCCCCAGCGGTCATCACAGTGTTTCATACGCATGTGTGGGAAGGCGCTGTTGATTACAGACCCATCCATCTTCCTCTGCGAGTTCTGGTGACCATGGAAACTTTTAATGTCTCAAGTAACCTGACAATTGAGTCAAATGTGTCCCTACTAAGATTTATTATCGATGATGCTGCATTATATCTCTCTGATAAGTGCAGTGGTTCTGCTAACATTAGAAATTACGTATGTGTGTTAGACCTTGGATTGTTTGAATTGTCTCTCTTCACGTGTGACAGCAGTGAACAGGGTCATCCCCGGATAGAACTGCGCATGTCCAACAATATAGTCAATGTCAGGACTTGCTCTGACTCGTGTTCCGCCCTCCTTCAGTTGATTCAGTACATTGCTGCAGATGGAGACTTAGTACCCAGTTATGAAGCAGAACCACCCGATACTGCAAAAACACCCTCGACTCCAAGCCGCTGTCCAGCTGAGCCACCAGTCAAACAGGGGTCCATGGATGAAGGTGCTTTAAGCACTATCATGACAGAGGCCATGGTAGAAGAGACCAATTCAGATAAGGGTTCAAGGGGAGAGTTAAGTCACCAGCTTTCCACATCACCGAGGCGAGATCTTTTCCTGTTTCCGGATGATGAAATGGCGAGTGCCCTGGAAGACTTCTCTCCTGAAACTGAGAATAACTCGAACGCACCCATTGGTAATCTGGGtcaggaagaagaagaatacaGCGACGATGATTTCTGTATTCTGGAGCATCCTGATATAGAACCCGAGGACTTGAGTCATGAAGTTGTAATCAAATCTCTCACTGATGAACAAGTCAACGTTGTGGAAAATCACTTCACCATTCCGATTGGTCCGAGTGACCAGCTAAGTGCCCCCAGTCATTTCCCGCCAGCTGTATTCAGCTACACATTAAAGGAGATGTCTGTGGTGTGGCATTTGTATGGTGGCCAAGATTTTGGTGCCACGCCGTCACGTGACGAAAAGAAGACAATAAGCTTTGCTGTGGATGAGAAAGGACGGCCAGTTGACAGCTTCTCTGTTAGACCCACTGTCTTAAATCCTCCCAAGGCAACGTCTAACAGCTCCAAGAAGCTCTCTCAAAAAAGCGGCGGACCGAACAGGAATAATCATGTGTTGATGGAGTTTTATTTAAACAAGATTCGTCTACAGTATGAGGGTTATCCTGAAGACTCAGAGCAGGTGTCGAGACTCGTGCTGCTTGTGCAGGATGTAGAGATAAGGGACCGGTTGGCTCATTCACAGATAAACAAATTCCTGTACCAGTACACGTCCGAGGCCTGTCCAAAACAGACCCATGCTAATATGGTAAAATGCCTCTTATGA

Transcript

BRAKERYMET00000037988

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80XK6	Autophagy-related protein 2 homolog B OS=Mus musculus OX=10090 GN=Atg2b PE=1 SV=3
Q96BY7	Autophagy-related protein 2 homolog B OS=Homo sapiens OX=9606 GN=ATG2B PE=1 SV=5
Q08D51	Autophagy-related protein 2 homolog A OS=Xenopus tropicalis OX=8364 GN=atg2a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004072 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13329 all species →	ATG2_CAD	Autophagy-related protein 2, middle RBG modules	Repeat	Interproscan
PF12624 all species →	Chorein_N	VPS13-like, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026885 all species →	Domain	Autophagy-related protein 2, middle RBG module	Interproscan
IPR026854 all species →	Domain	Vacuolar protein sorting-associated protein 13-like, N-terminal domain	Interproscan
IPR026849 all species →	Family	Autophagy-related protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13190 all species →	AUTOPHAGY-RELATED 2, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0044805 all species →	Biological Process	obsolete late nucleophagy	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000037988.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.