Gene detail

Detailed information of BRAKERYMEP00000038079.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: KAJ7389056.1, Rad2 nuclease [Desmophyllum pertusum]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24558	Exonuclease 1 OS=Drosophila melanogaster OX=7227 GN=tos PE=1 SV=1
Q9UQ84	Exonuclease 1 OS=Homo sapiens OX=9606 GN=EXO1 PE=1 SV=2
P39875	Exodeoxyribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EXO1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000453 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00752 all species →	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan
IPR006085 all species →	Domain	XPG, N-terminal	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR019974 all species →	Conserved_site	XPG conserved site	Interproscan
IPR044752 all species →	Domain	Exonuclease 1-like, PIN-like domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0035312 all species →	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0016788 all species →	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000038079.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.