Gene detail

Detailed information of CAB3976635.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3976635.1, histone-lysine N-methyltransferase setd3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3976635.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B7ZUF3	Actin-histidine N-methyltransferase OS=Xenopus tropicalis OX=8364 GN=setd3 PE=2 SV=1
Q91WC0	Actin-histidine N-methyltransferase OS=Mus musculus OX=10090 GN=Setd3 PE=1 SV=1
B0VX69	Actin-histidine N-methyltransferase OS=Callithrix jacchus OX=9483 GN=SETD3 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006901 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09273 all species →	Rubis-subs-bind	Rubisco LSMT substrate-binding	Domain	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015353 all species →	Domain	Rubisco LSMT, substrate-binding domain	Interproscan
IPR036464 all species →	Homologous_superfamily	Rubisco LSMT, substrate-binding domain superfamily	Interproscan
IPR044428 all species →	Domain	SETD3, SET domain	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR025785 all species →	Family	Actin-histidine N-methyltransferase SETD3	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR050600 all species →	Family	SETD3/SETD6 methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13271 all species →	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0018064 all species →	Molecular Function	protein-L-histidine N-tele-methyltransferase activity	Interproscan
GO:0030047 all species →	Biological Process	actin modification	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018023 all species →	Biological Process	peptidyl-lysine trimethylation	Interproscan
GO:0018026 all species →	Biological Process	peptidyl-lysine monomethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3976635.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3976635.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

18TPM > 0

4Conditions

76.4Max TPM

25.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	22.62	36.31
apical branchlet · Temperature treatment at T0	6	5	21.10	66.41
apical branchlet · Temperature treatment at T25	5	5	29.74	59.82
apical branchlet · Control at T0	4	3	32.57	76.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	36.31
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	35.35
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	27.01
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	23.80
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	13.29
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	66.41
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	40.88
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	12.24
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	4.56
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.53
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	59.82
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	31.51
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	25.62
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	17.97
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	13.79
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	76.41
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	27.16
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	26.70
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.