Genomic Location: not available for this species
NR annotation: CAB3976636.1, histone-lysine N-methyltransferase setd3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3976636.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| B7ZUF3 | Actin-histidine N-methyltransferase OS=Xenopus tropicalis OX=8364 GN=setd3 PE=2 SV=1 |
| Q91WC0 | Actin-histidine N-methyltransferase OS=Mus musculus OX=10090 GN=Setd3 PE=1 SV=1 |
| B0VX69 | Actin-histidine N-methyltransferase OS=Callithrix jacchus OX=9483 GN=SETD3 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006901 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00856 all species → | SET | SET domain | Family | Interproscan |
| PF09273 all species → | Rubis-subs-bind | Rubisco LSMT substrate-binding | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050600 all species → | Family | SETD3/SETD6 methyltransferase | Interproscan |
| IPR046341 all species → | Homologous_superfamily | SET domain superfamily | Interproscan |
| IPR025785 all species → | Family | Actin-histidine N-methyltransferase SETD3 | Interproscan |
| IPR044428 all species → | Domain | SETD3, SET domain | Interproscan |
| IPR001214 all species → | Domain | SET domain | Interproscan |
| IPR036464 all species → | Homologous_superfamily | Rubisco LSMT, substrate-binding domain superfamily | Interproscan |
| IPR015353 all species → | Domain | Rubisco LSMT, substrate-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13271 all species → | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016279 all species → | Molecular Function | protein-lysine N-methyltransferase activity | Interproscan |
| GO:0018023 all species → | Biological Process | peptidyl-lysine trimethylation | Interproscan |
| GO:0018026 all species → | Biological Process | peptidyl-lysine monomethylation | Interproscan |
| GO:0018064 all species → | Molecular Function | protein-L-histidine N-tele-methyltransferase activity | Interproscan |
| GO:0030047 all species → | Biological Process | actin modification | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19199 | SETD3; protein-histidine N-methyltransferase | EC:2.1.1.85 | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of CAB3976636.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
