Gene detail

Detailed information of CAB3976725.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3976725.1, nesprin-1-like isoform X1 [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Sequence

No sequence record for CAB3976725.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPN3	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4/5 OS=Homo sapiens OX=9606 GN=MACF1 PE=1 SV=4
D3ZHV2	Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus OX=10116 GN=Macf1 PE=1 SV=1
P30427	Plectin OS=Rattus norvegicus OX=10116 GN=Plec PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001024 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17902 all species →	SH3_10	SH3 domain	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR041615 all species →	Domain	Desmoplakin, SH3 domain	Interproscan
IPR043197 all species →	Family	Plakin	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23169 all species →	ENVOPLAKIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005882 all species →	Cellular Component	intermediate filament	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042060 all species →	Biological Process	wound healing	Interproscan
GO:0045104 all species →	Biological Process	intermediate filament cytoskeleton organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06115	SPTBN1_4_5; spectrin beta, non-erythrocytic 1/4/5	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.