Genomic Location: not available for this species
NR annotation: CAB3976899.1, phosphopantothenate--cysteine ligase isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3976899.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9HAB8 | Phosphopantothenate--cysteine ligase OS=Homo sapiens OX=9606 GN=PPCS PE=1 SV=2 |
| Q8VDG5 | Phosphopantothenate--cysteine ligase OS=Mus musculus OX=10090 GN=Ppcs PE=1 SV=1 |
| Q69S81 | Phosphopantothenate--cysteine ligase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0575200 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006518 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04127 all species → | DFP | DNA / pantothenate metabolism flavoprotein | Family | Interproscan |
| PF00046 all species → | Homeodomain | Homeodomain | Domain | Interproscan |
| PF00157 all species → | Pou | Pou domain - N-terminal to homeobox domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000327 all species → | Domain | POU-specific domain | Interproscan |
| IPR010982 all species → | Homologous_superfamily | Lambda repressor-like, DNA-binding domain superfamily | Interproscan |
| IPR001356 all species → | Domain | Homeobox domain | Interproscan |
| IPR007085 all species → | Domain | DNA/pantothenate metabolism flavoprotein, C-terminal | Interproscan |
| IPR017970 all species → | Conserved_site | Homeobox, conserved site | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR013847 all species → | Domain | POU domain | Interproscan |
| IPR035929 all species → | Homologous_superfamily | CoaB-like superfamily | Interproscan |
| IPR050255 all species → | Family | POU domain transcription factor | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11636 all species → | POU DOMAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
CAB3976899.1.Transcript abundance of CAB3976899.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
