Gene detail

Detailed information of CAB3977128.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3977128.1, eukaryotic peptide chain release factor subunit 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3977128.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GR88	Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis OX=7723 GN=ERF1 PE=2 SV=1
P62498	Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis OX=8364 GN=etf1 PE=2 SV=1
Q0VCX5	Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus OX=9913 GN=ETF1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005547 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03463 all species →	eRF1_1	eRF1 domain 1	Domain	Interproscan
PF03465 all species →	eRF1_3	eRF1 domain 3	Domain	Interproscan
PF03464 all species →	eRF1_2	eRF1 domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR005140 all species →	Domain	eRF1 domain 1/Pelota-like	Interproscan
IPR004403 all species →	Family	Peptide chain release factor eRF1/aRF1	Interproscan
IPR042226 all species →	Homologous_superfamily	eRF1, domain 2 superfamily	Interproscan
IPR005142 all species →	Domain	eRF1 domain 3	Interproscan
IPR005141 all species →	Domain	eRF1 domain 2	Interproscan
IPR024049 all species →	Homologous_superfamily	eRF1, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10113 all species →	PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0002184 all species →	Biological Process	cytoplasmic translational termination	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016149 all species →	Molecular Function	translation release factor activity, codon specific	Interproscan
GO:0018444 all species →	Cellular Component	translation release factor complex	Interproscan
GO:1990825 all species →	Molecular Function	sequence-specific mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03265	ETF1, ERF1; peptide chain release factor subunit 1	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3977128.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

16TPM > 0

4Conditions

196.6Max TPM

42.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	54.59	147.84
apical branchlet · Temperature treatment at T0	6	5	42.46	152.40
apical branchlet · Temperature treatment at T25	5	5	60.92	196.63
apical branchlet · Control at T0	4	1	3.00	12.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	147.84
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	65.58
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	61.86
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	28.64
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	23.64
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	152.40
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	47.26
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	43.32
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	9.83
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.93
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	196.63
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	64.70
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	25.36
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	12.90
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	5.02
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	12.01
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.