Genomic Location: not available for this species
NR annotation: CAB3977144.1, myoferlin-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977144.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q69ZN7 | Myoferlin OS=Mus musculus OX=10090 GN=Myof PE=1 SV=2 |
| Q9NZM1 | Myoferlin OS=Homo sapiens OX=9606 GN=MYOF PE=1 SV=1 |
| O75923 | Dysferlin OS=Homo sapiens OX=9606 GN=DYSF PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000314 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00168 all species → | C2 | C2 domain | Domain | Interproscan |
| PF08150 all species → | FerB | FerB (NUC096) domain | Domain | Interproscan |
| PF08165 all species → | FerA | FerA (NUC095) domain | Domain | Interproscan |
| PF16165 all species → | Ferlin_C | Ferlin C-terminus | Family | Interproscan |
| PF08151 all species → | FerI | FerI (NUC094) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035892 all species → | Homologous_superfamily | C2 domain superfamily | Interproscan |
| IPR000008 all species → | Domain | C2 domain | Interproscan |
| IPR037722 all species → | Domain | Ferlin, third C2 domain | Interproscan |
| IPR012561 all species → | Domain | Ferlin B-domain | Interproscan |
| IPR012560 all species → | Domain | Ferlin A-domain | Interproscan |
| IPR037720 all species → | Domain | Ferlin, second C2 domain | Interproscan |
| IPR032362 all species → | Domain | Ferlin, C-terminal domain | Interproscan |
| IPR037723 all species → | Domain | Ferlin, fourth C2 domain | Interproscan |
| IPR037725 all species → | Domain | Ferlin, sixth C2 domain | Interproscan |
| IPR012968 all species → | Domain | FerIin domain | Interproscan |
| IPR006614 all species → | Domain | Peroxin/Ferlin domain | Interproscan |
| IPR037726 all species → | Domain | Ferlin, first C2 domain | Interproscan |
| IPR037721 all species → | Family | Ferlin family | Interproscan |
| IPR037724 all species → | Domain | Ferlin, fifth C2 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12546 all species → | FER-1-LIKE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0007009 all species → | Biological Process | plasma membrane organization | Interproscan |
| GO:0061025 all species → | Biological Process | membrane fusion | Interproscan |
CAB3977144.1.Transcript abundance of CAB3977144.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 38.49 | 93.64 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 39.03 | 76.45 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 16.41 | 77.58 | |
| apical branchlet · Control at T0 | 4 | 3 | 12.23 | 23.91 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
