Genomic Location: not available for this species
NR annotation: CAB3977183.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3977183.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007154 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15813 all species → | DUF4708 | Domain of unknown function (DUF4708) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031643 all species → | Domain | Domain of unknown function DUF4708 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR28495 all species → | HYPOTHETICAL PROTEIN LOC100359752 | Interproscan |
CAB3977183.1. This gene does have a gene model — the search simply returned no hit.CAB3977183.1.Transcript abundance of CAB3977183.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 3 | 0.19 | 0.74 | |
| apical branchlet · Temperature treatment at T0 | 6 | 1 | 0.02 | 0.14 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.04 | 0.19 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.03 | 0.13 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
