Detailed information of CAB3977187.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3977187.1, cysteine desulfurase, mitochondrial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB3977187.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9Y697Cysteine desulfurase OS=Homo sapiens OX=9606 GN=NFS1 PE=1 SV=3
Q5RDE7Cysteine desulfurase OS=Pongo abelii OX=9601 GN=NFS1 PE=2 SV=1
Q9Z1J3Cysteine desulfurase OS=Mus musculus OX=10090 GN=Nfs1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001536 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00266
all species →		Aminotran_5Aminotransferase class-VDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010240
all species →		FamilyCysteine desulfurase IscSInterproscan
IPR000192
all species →		DomainAminotransferase class V domainInterproscan
IPR015421
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR016454
all species →		FamilyCysteine desulfuraseInterproscan
IPR020578
all species →		Binding_siteAminotransferase class-V, pyridoxal-phosphate binding siteInterproscan
IPR015424
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR015422
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11601
all species →		CYSTEINE DESULFURYLASE FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0030170
all species →		Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0031071
all species →		Molecular Functioncysteine desulfurase activityInterproscan
GO:0044571
all species →		Biological Process[2Fe-2S] cluster assemblyInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0016226
all species →		Biological Processiron-sulfur cluster assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04487iscS, NFS1; cysteine desulfuraseEC:2.8.1.7
Prokaryotic defense systemko02048deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3977187.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
15TPM > 0
4Conditions
42.8Max TPM
16.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 5 22.33 41.73
apical branchlet · Temperature treatment at T0 6 3 15.56 39.21
apical branchlet · Temperature treatment at T25 5 4 15.01 42.84
apical branchlet · Control at T0 4 3 8.67 25.22

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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